• Organization: Department of Agriculture
• Updated: 2024-02-13

Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene...

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• Organization: Department of Agriculture
• Updated: 2023-12-18

The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases: Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly This...

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• Organization: Department of Agriculture
• Updated: 2024-02-13

CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from Gossypium species. This can be done using nucleotide sequences or peptide sequences. BLAST...

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• Organization: Department of Agriculture
• Updated: 2025-11-21

CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu. Whole...

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• Organization: Department of Agriculture
• Updated: 2024-02-13

Conserved syntenic regions among publicly available cotton genomes were analyzed by CottonGen and made available using the Tripal Synteny Viewer developed by the Fei Bioinformatics Lab from the...

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• Organization: Department of Agriculture
• Updated: 2025-11-21

CottonGen (https://www.cottongen.org) is a curated and integrated web-based relational database providing access to publicly available genomic, genetic and breeding data to enable basic,...

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• Organization: Department of Agriculture
• Updated: 2024-02-13

Primer3web version 4.0.0 allows users to pick PCR primers from a DNA sequence based on criteria including: oligonucleotide melting temperature, size, GC content, and primer-dimer...

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• Organization: Department of Agriculture
• Updated: 2024-02-13

MapViewer is a graphical tool for viewing and comparing Gossypium spp. genetic maps. It includes dynamically scrollable maps, correspondence matrices, dot plots, links to details about map...

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• Organization: Department of Agriculture
• Updated: 2024-02-13

BIMS, the Breeding Information Management System, is a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store,...

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