• Organization: National Institute of Standards and Technology
• Updated: 2021-01-26 00:00:00

The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files,...

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• Organization: Department of Agriculture
• Updated: 2023-11-30

The findmap.f90 program aligns sequence reads to reference map, calls previous variants, and identifies new variants. Program and download information can be found at the Animal Improvement...

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• Organization: National Institute of Standards and Technology
• Updated: 2021-12-20 00:00:00

The Human Pangenome Reference Consortium (HPRC) tested which combination of current genome sequencing and automated assembly approaches yields the most complete, accurate, and cost-effective...

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• Organization: U.S. Environmental Protection Agency
• Updated: 2021-02-17

The primary goal of this study was to investigate the effects of whether organocatalyst (ORGΔ) treatment improves DNA-sequencing data by overcoming formalin-induced artifacts from clinical...

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• Organization: Department of Agriculture
• Updated: 2025-11-21

Oat Landrace Diversity (OLD) Panel phenotypes, genotypes, and metadata from: Rahman et al. (2024) "A global assembly of landrace oat (Avena sativa L.) accessions is a discovery resource for...

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• Organization: Department of Agriculture
• Updated: 2026-01-20

Summary: Genome-wide polymorphisms called from publicly-available switchgrass genotype data. These variants are used in a publication under review, Harnessing citizen science to contextualize...

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• Organization: Department of Agriculture
• Updated: 2025-06-25

Salmonella pangenome graph and variant call data for 539,283 genomesDescription:Salmonella enterica causes human disease and decreases agricultural production. The overall goals of this project is...

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