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Anastrepha ludens genome assembly scripts
The data in this repository is to provide the scripts used in the assembly of the Anastrepha ludens genome. It can be used to replicate the steps necessary to assemble the genome described in National Center for Biotechnology Information (NCBI) BioProject: PRJNA803324. This genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda.
Resources
6 resources available
-
blob.sh
SH -
hifiasm.sh
SH -
genomescope2.sh
SH -
hifiadapterfiltFCS.sh
SH -
hic_yahs.sh
SH -
busco5.sh
SH
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Sim, Sheina B.",
"hasEmail": "mailto:sheina.sim@usda.gov"
}
|
| description | <p dir="ltr">The data in this repository is to provide the scripts used in the assembly of the <i>Anastrepha ludens </i>genome. It can be used to replicate the steps necessary to assemble the genome described in National Center for Biotechnology Information (NCBI) BioProject: <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA803324/" target="_blank">PRJNA803324</a>. This genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda.</p><p><br></p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "blob.sh",
"format": "sh",
"mediaType": "text/x-shellscript",
"downloadURL": "https://ndownloader.figshare.com/files/46146660"
},
{
"@type": "dcat:Distribution",
"title": "hifiasm.sh",
"format": "sh",
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},
{
"@type": "dcat:Distribution",
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},
{
"@type": "dcat:Distribution",
"title": "hifiadapterfiltFCS.sh",
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"mediaType": "text/x-shellscript",
"downloadURL": "https://ndownloader.figshare.com/files/46146672"
},
{
"@type": "dcat:Distribution",
"title": "hic_yahs.sh",
"format": "sh",
"mediaType": "text/x-shellscript",
"downloadURL": "https://ndownloader.figshare.com/files/46146675"
},
{
"@type": "dcat:Distribution",
"title": "busco5.sh",
"format": "sh",
"mediaType": "text/x-shellscript",
"downloadURL": "https://ndownloader.figshare.com/files/46146714"
}
]
|
| identifier | 10.15482/USDA.ADC/25762509.v1 |
| keyword |
[
"Anastrepha ludens",
"Mexfly",
"Mexican fruit fly",
"chromosomes",
"genome",
"genome assembly",
"genome assembly protocol"
]
|
| license | https://creativecommons.org/licenses/by/4.0/ |
| modified | 2025-08-27 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2024-05-07/2024-05-07 |
| title | Anastrepha ludens genome assembly scripts |
