Return to search results

Angus Sequence Data: Animal 519-2

Published by Agricultural Research Service | Department of Agriculture | Metadata Last Checked: March 13, 2026 | Last Modified: 2026-02-19

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program does not have germplasm for this animal.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:tar file containing 14 files. The files are:RAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R1_001.fastq.gzRAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R2_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R1_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R2_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R1_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R2_001.fastq.gz

Resources

1 resource available

https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode33208%2F

TEXT/HTML

Download

Find Related Datasets

Click any tag below to search for similar datasets

Complete Metadata

@type	dcat:Dataset
accessLevel	public
bureauCode	[ "005:18" ]
contactPoint	{ "fn": "Blackburn, Harvey", "hasEmail": "mailto:harvey.blackburn@usda.gov" }
description	<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program does not have germplasm for this animal.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WA06_i5-515_i7-102_S6_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S142_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA06-i5-515-i7-102_S6_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA06-i5-515-i7-102_S6_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA06_i5-515_i7-102_S6_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA06_i5-515_i7-102_S361_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p>
distribution	[ { "@type": "dcat:Distribution", "title": "https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode33208%2F", "mediaType": "text/html", "downloadURL": "https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode33208%2F" } ]
identifier	10.15482/USDA.ADC/1529245
keyword	[ "ARS", "DNA sequence", "GRIN", "NP101", "animals", "cryopreservation", "data.gov", "genetic diversity", "germplasm" ]
license	https://www.usa.gov/publicdomain/label/1.0/
modified	2026-02-19
programCode	[ "005:040" ]
publisher	{ "name": "Agricultural Research Service", "@type": "org:Organization" }
spatial	"{"type": "Point", "coordinates": [-106.56610600168, 41.222307724193]}"
temporal	2012-01-01/2013-12-31
title	Angus Sequence Data: Animal 519-2