Annotated reference transcriptome for female Culicoides sonorensis biting midges
Unigene sequences were annotated by BlastX alignment to the non-redundant protein database (National Center for Biotechnology Information/GenBank) and the Aedes aegypti and Culex quinquefasciatus gene annotations (Vectorbase). This was done with a 1e-05 expectation value. Top hits are shown including accession numbers and description, if available. Unigene number and corresponding GenBank accession numbers are provided for all C. sonorensis genes. Both tables are modified from supplementary information tables at http://dx.doi.org/10.1371/journal.pone.0098123.s003 and numbered accordingly.
Resources in this dataset:Resource Title: table s2 annotation. File Name: table s2 annotation.xlsxResource Title: table S3 GO terms. File Name: table S3 GO terms.xlsxResource Title: data dictionary Nayduch S2 S3. File Name: data dictionary Nayduch S2 S3_2.csvResource Description: Defines parameters for annotation and GO terms.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Saski, Christopher A.",
"hasEmail": "mailto:saski@clemson.edu"
}
|
| description | <p>Unigene sequences were annotated by BlastX alignment to the non-redundant protein database (National Center for Biotechnology Information/GenBank) and the Aedes aegypti and Culex quinquefasciatus gene annotations (Vectorbase). This was done with a 1e-05 expectation value. Top hits are shown including accession numbers and description, if available. Unigene number and corresponding GenBank accession numbers are provided for all C. sonorensis genes. Both tables are modified from supplementary information tables at <a href="http://dx.doi.org/10.1371/journal.pone.0098123.s003">http://dx.doi.org/10.1371/journal.pone.0098123.s003</a> and numbered accordingly.</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: table s2 annotation.</p> <p>File Name: table s2 annotation.xlsx</p></li><br><li><p>Resource Title: table S3 GO terms.</p> <p>File Name: table S3 GO terms.xlsx</p></li><br><li><p>Resource Title: data dictionary Nayduch S2 S3.</p> <p>File Name: data dictionary Nayduch S2 S3_2.csv</p><p>Resource Description: Defines parameters for annotation and GO terms.</p></li></ul> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "data dictionary Nayduch S2 S3_2.csv",
"format": "csv",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/43726545"
},
{
"@type": "dcat:Distribution",
"title": "table s2 annotation.xlsx",
"format": "xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://ndownloader.figshare.com/files/43726548"
},
{
"@type": "dcat:Distribution",
"title": "table S3 GO terms.xlsx",
"format": "xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://ndownloader.figshare.com/files/43726557"
}
]
|
| identifier | 10.15482/USDA.ADC/1193288 |
| keyword |
[
"ARS",
"Culicoides sonorensis",
"EHDV",
"Epizootic hemorrhagic disease virus",
"NP104",
"RNAseq",
"anautogeny",
"biting midge",
"bluetongue",
"data.gov",
"de novo transcriptome",
"flies",
"hematophagy",
"insects",
"vector",
"vitellogenesis"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2023-12-18 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| title | Annotated reference transcriptome for female Culicoides sonorensis biting midges |
