Assessing cryptic reef diversity of colonizing marine invertebrates using Autonomous Reef Monitoring Structures (ARMS) deployed at coral reef sites in Batangas, Philippines from 2012-03-12 to 2015-05-31 (NCEI Accession 0162829)
Autonomous Reef Monitoring Structures (ARMS) are used by the NOAA Coral Reef Ecosystem Program (CREP) to assess and monitor cryptic reef diversity across the Pacific. Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS are designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner. Thus, the use of ARMS is a systematic, consistent, and comparable method for monitoring the marine cryptobiota community over time.
The data described here were collected by CREP from ARMS moored at fixed climate survey sites located on hard bottom shallow water (< 15 m) habitats in the Philippines. Climate sites were established by CREP to assess multiple features of the coral reef environment (in addition to the data described herein) from March 2012 to June 2015, and three ARMS units were deployed by SCUBA divers at each survey site. The data can be accessed online via the NOAA National Centers for Environmental Information (NCEI) Ocean Archive.
Each ARMS unit, constructed in-house by CREP, consisted of 23 cm x 23 cm gray, type 1 PVC plates stacked in alternating series of 4 open and 4 obstructed layers and attached to a base plate of 35 cm x 45 cm, which was affixed to the reef. Upon recovery, each ARMS unit was encapsulated, brought to the surface, and disassembled and processed. Disassembled plates were photographed to document recruited sessile organisms and scraped clean and preserved in 95% ethanol for DNA processing. Recruited motile organisms were sieved into 3 size fractions: 2 mm, 500 µm, and 100 µm. The 500 µm and 100 µm fractions were bulked and also preserved in 95% ethanol for DNA processing. The 2 mm fraction was sorted into morphospecies. The DNA sequencing data are not included in this archival package.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | non-public |
| contactPoint |
{
"fn": "NOAA National Centers for Environmental Information",
"@type": "vcard:Contact",
"hasEmail": "mailto:ncei.info@noaa.gov"
}
|
| describedByType | application/octet-steam |
| description | Autonomous Reef Monitoring Structures (ARMS) are used by the NOAA Coral Reef Ecosystem Program (CREP) to assess and monitor cryptic reef diversity across the Pacific. Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS are designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner. Thus, the use of ARMS is a systematic, consistent, and comparable method for monitoring the marine cryptobiota community over time. The data described here were collected by CREP from ARMS moored at fixed climate survey sites located on hard bottom shallow water (< 15 m) habitats in the Philippines. Climate sites were established by CREP to assess multiple features of the coral reef environment (in addition to the data described herein) from March 2012 to June 2015, and three ARMS units were deployed by SCUBA divers at each survey site. The data can be accessed online via the NOAA National Centers for Environmental Information (NCEI) Ocean Archive. Each ARMS unit, constructed in-house by CREP, consisted of 23 cm x 23 cm gray, type 1 PVC plates stacked in alternating series of 4 open and 4 obstructed layers and attached to a base plate of 35 cm x 45 cm, which was affixed to the reef. Upon recovery, each ARMS unit was encapsulated, brought to the surface, and disassembled and processed. Disassembled plates were photographed to document recruited sessile organisms and scraped clean and preserved in 95% ethanol for DNA processing. Recruited motile organisms were sieved into 3 size fractions: 2 mm, 500 µm, and 100 µm. The 500 µm and 100 µm fractions were bulked and also preserved in 95% ethanol for DNA processing. The 2 mm fraction was sorted into morphospecies. The DNA sequencing data are not included in this archival package. |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "NCEI Dataset Landing Page",
"mediaType": "placeholder/value",
"description": "Navigate directly to the URL for a descriptive web page with download links.",
"downloadURL": "https://www.ncei.noaa.gov/archive/accession/0162829",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "Descriptive Information",
"mediaType": "placeholder/value",
"description": "Navigate directly to the URL for a descriptive web page with download links.",
"downloadURL": "https://www.ncei.noaa.gov/archive/accession/oas/162829",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "HTTPS",
"mediaType": "placeholder/value",
"description": "Navigate directly to the URL for data access and direct download.",
"downloadURL": "https://www.ncei.noaa.gov/archive/accession/download/162829",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "FTP",
"mediaType": "placeholder/value",
"description": "These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).",
"downloadURL": "ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0110/0162829/",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "https://www.fisheries.noaa.gov/inport/item/45818",
"mediaType": "placeholder/value",
"description": "InPort Metadata Record",
"downloadURL": "https://www.fisheries.noaa.gov/inport/item/45818",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "GCMD Keyword Forum Page",
"mediaType": "placeholder/value",
"description": "Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords",
"downloadURL": "https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "NCEI Contact Information",
"mediaType": "placeholder/value",
"description": "Information for contacts at NCEI.",
"downloadURL": "https://www.ncei.noaa.gov/contact",
"describedByType": "application/octet-steam"
}
]
|
| identifier | gov.noaa.nodc:0162829 |
| issued | 2017-05-24T00:00:00.000+00:00 |
| keyword |
[
"0162829",
"biological data",
"INVERTEBRATE SPECIES",
"SPECIES IDENTIFICATION",
"SPECIES IDENTIFICATION - COUNT",
"laboratory analysis",
"visual observation",
"biological",
"laboratory analyses",
"Coral Reef Ecosystem Program",
"Coral Reef Ecosystem Program",
"Coral Reef Conservation Program (CRCP)",
"CORAL REEF STUDIES",
"Coral Triangle Initiative (CTI)",
"North Pacific Ocean",
"Philippine Sea",
"oceanography",
"CRED",
"CREP",
"Coral Reef Ecosystem Division",
"Coral Reef Ecosystem Program",
"PIFSC",
"Pacific Islands Fisheries Science Center",
"DOC/NOAA/NMFS > National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
"483",
"Climate, Biodiversity and Fisheries in the Coral Triangle: Embracing the E in Ecosystem Approaches to Fisheries Management",
"Numeric Data Sets > Biology",
"EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Autonomous Reef Monitoring Structure (ARMS)",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Baseline studies",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Biological",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology",
"EARTH SCIENCE > Oceans > Marine Biology > Brachyura",
"EARTH SCIENCE > Oceans > Marine Biology > Cryptobiota",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Biodiversity",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Census",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates",
"EARTH SCIENCE > BIOLOGICAL CLASSIFICATION",
"EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES",
"USAID",
"United States Agency for International Development",
"VISUAL OBSERVATIONS > VISUAL OBSERVATIONS",
"Autonomous Reef Monitoring Structure (ARMS)",
"COUNTRY/TERRITORY > Philippines > Batangas > Arthur's Rock (13N120E0002)",
"COUNTRY/TERRITORY > Philippines > Batangas > Mabini (13N120E0032)",
"COUNTRY/TERRITORY > Philippines > Batangas > Tingloy (13N120E0009)",
"COUNTRY/TERRITORY > Philippines > Batangas > Twin Rocks Sanctuary (13N120E0005)",
"OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Arthur's Rock (13N120E0002)",
"OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Mabini (13N120E0032)",
"OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Twin Rocks Sanctuary (13N120E0005)",
"OCEAN BASIN > Pacific Ocean > South China Sea > Maricaban Island > Tingloy (13N120E0009)",
"OCEAN > PACIFIC OCEAN > NORTH PACIFIC OCEAN",
"Arthur's Reef",
"Batalang Bato",
"Batong Buhay",
"Koala Reserve Area",
"Philippines",
"Twin Rocks",
"Verde Island Passage",
"PH0AXF"
]
|
| landingPage | https://www.ncei.noaa.gov/contact |
| language |
[]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2021-06-14T00:00:00.000+00:00 |
| publisher |
{
"name": "NOAA National Centers for Environmental Information",
"@type": "org:Organization"
}
|
| references |
[
"https://www.fisheries.noaa.gov/inport/item/45818"
]
|
| rights | otherRestrictions |
| spatial | 120.895127,13.658594,120.871943,13.728054 |
| temporal | 2012-03-12T00:00:00+00:00/2015-05-31T00:00:00+00:00 |
| title | Assessing cryptic reef diversity of colonizing marine invertebrates using Autonomous Reef Monitoring Structures (ARMS) deployed at coral reef sites in Batangas, Philippines from 2012-03-12 to 2015-05-31 (NCEI Accession 0162829) |
