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Assessing residential activity in a home plumbing system simulator: monitoring the occurrence and relationship of major opportunistic pathogens and phagocytic amoebas (FM)

Published by U.S. EPA Office of Research and Development (ORD) | U.S. Environmental Protection Agency | Metadata Last Checked: August 02, 2025 | Last Modified: 2023-05-04
The raw sequence reads have been submitted to the NCBI Sequence Read Archive (SRA) under the BioProject PRJNA961987 with the following BioSample numbers: SAMN34376234, SAMN34376235, SAMN34376236, SAMN34376237, SAMN34376238, SAMN34376239, SAMN34376240, SAMN34376241, SAMN34376242, SAMN34376243, SAMN34376244, SAMN34376245, SAMN34376246, SAMN34376247, SAMN34376248, SAMN34376249, SAMN34376250, SAMN34376251, SAMN34376252, SAMN34376253, SAMN34376254, SAMN34376255, and SAMN34376256. An abundance matrix (Table_taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a number of reads and percentage of all reads obtained for each individual location and residential activity. A table (Table_water_quality_parameters.xlsx) contains rows as residential activity with date sampled, columns as Temp (°C), Free Chlorine (Cl2/L), pH, L. pneumophila, M. intracellulare, P. aeruginosa, and V. vermiformis for each HPS section. This dataset is associated with the following publication: Gomez-Alvarez, V., H. Ryu, M. Tang, M. McNeely, C. Muhlen, M. Urbanic, D. Williams, D. Lytle, and L. Boczek. Assessing residential activity in a home plumbing system simulator: monitoring the occurrence and relationship of major opportunistic pathogens and phagocytic amoebas. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 14: 1260460, (2023).

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376234

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376235

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376236

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376237

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376238

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376239

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376240

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376241

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376242

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376243

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376244

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376245

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376246

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376247

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376248

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376249

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376250

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376251

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376252

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376253

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376254

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376255

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  • https://www.ncbi.nlm.nih.gov/biosample/SAMN34376256

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  • Table_taxonomy.xlsx

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  • Table_water_quality_parameters.xlsx

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Complete Metadata
accessLevel public
bureauCode 
                                            [
  "020:00"
]
contactPoint 
                                            {
  "fn": "Vicente Gomez-Alvarez",
  "hasEmail": "mailto:gomez-alvarez.vicente@epa.gov"
}
description The raw sequence reads have been submitted to the NCBI Sequence Read Archive (SRA) under the BioProject PRJNA961987 with the following BioSample numbers: SAMN34376234, SAMN34376235, SAMN34376236, SAMN34376237, SAMN34376238, SAMN34376239, SAMN34376240, SAMN34376241, SAMN34376242, SAMN34376243, SAMN34376244, SAMN34376245, SAMN34376246, SAMN34376247, SAMN34376248, SAMN34376249, SAMN34376250, SAMN34376251, SAMN34376252, SAMN34376253, SAMN34376254, SAMN34376255, and SAMN34376256. An abundance matrix (Table_taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a number of reads and percentage of all reads obtained for each individual location and residential activity. A table (Table_water_quality_parameters.xlsx) contains rows as residential activity with date sampled, columns as Temp (°C), Free Chlorine (Cl2/L), pH, L. pneumophila, M. intracellulare, P. aeruginosa, and V. vermiformis for each HPS section. This dataset is associated with the following publication: Gomez-Alvarez, V., H. Ryu, M. Tang, M. McNeely, C. Muhlen, M. Urbanic, D. Williams, D. Lytle, and L. Boczek. Assessing residential activity in a home plumbing system simulator: monitoring the occurrence and relationship of major opportunistic pathogens and phagocytic amoebas. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 14: 1260460, (2023).
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identifier https://doi.org/10.23719/1529129
keyword 
                                            [
  "Drinking water distribution system",
  "Home Plumbing Systems",
  "Premise Plumbing",
  "legionella"
]
license https://pasteur.epa.gov/license/sciencehub-license.html
modified 2023-05-04
programCode 
                                            [
  "020:000"
]
publisher 
                                            {
  "name": "U.S. EPA Office of Research and Development (ORD)",
  "subOrganizationOf": {
    "name": "U.S. Environmental Protection Agency",
    "subOrganizationOf": {
      "name": "U.S. Government"
    }
  }
}
references 
                                            [
  "https://doi.org/10.3389/fmicb.2023.1260460",
  "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10616306"
]
rights 
                                            null
title Assessing residential activity in a home plumbing system simulator: monitoring the occurrence and relationship of major opportunistic pathogens and phagocytic amoebas (FM)

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