BEAST log data from: Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine
These are the ".log" files from "Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in Influenza A virus (IAV) from North American swine" generated in BEAST and used to plot molecular substitution rates and calculate statistical distances between posterior distributions of these rates. The names of these files communicate information about the various BEAST runs using the following format: cladeOrLineageName_replicate_substitutionModel_treePrior_MCMCiterations_dateOfRunWithin2021.log where replicate is not always included Resources in this dataset:Resource Title: BEAST log file for clade N1.C.2.1. File Name: N1C21_SRD06_strict_GMRF_200MNov9.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.2. File Name: N1C2_SRD06_strict_GMRF_200MNov2.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3.1. File Name: N1C31_SRD06_strict_GMRF200M.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3.2. File Name: N1C32_SRD09_strict_GMRF_200MMay21.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3. File Name: N1C3_r1_hkyGamma4_GMRF_200MMay20.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.P. File Name: N1P_SRD06_strict_GMRF_200MAug2.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for the classical swine N1 lineage. File Name: N1classical_r1_SRD06_UCLN_GMRF_200MMay21.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Anderson, Tavis",
"hasEmail": "mailto:tavis.anderson@usda.gov"
}
|
| description | <p>These are the ".log" files from "Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in Influenza A virus (IAV) from North American swine" generated in BEAST and used to plot molecular substitution rates and calculate statistical distances between posterior distributions of these rates. The names of these files communicate information about the various BEAST runs using the following format: cladeOrLineageName_replicate_substitutionModel_treePrior_MCMCiterations_dateOfRunWithin2021.log where replicate is not always included </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: BEAST log file for clade N1.C.2.1.</p> <p>File Name: N1C21_SRD06_strict_GMRF_200M<em>Nov9.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.2.</p> <p>File Name: N1C2_SRD06_strict_GMRF_200M<em>Nov2.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.3.1.</p> <p>File Name: N1C31_SRD06_strict_GMRF<em>200M.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.3.2.</p> <p>File Name: N1C32_SRD09_strict_GMRF_200M<em>May21.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.C.3.</p> <p>File Name: N1C3_r1_hkyGamma4_GMRF_200M<em>May20.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for clade N1.P.</p> <p>File Name: N1P_SRD06_strict_GMRF_200M<em>Aug2.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li><br><li><p>Resource Title: BEAST log file for the classical swine N1 lineage.</p> <p>File Name: N1classical_r1_SRD06_UCLN_GMRF_200M<em>May21.log</em>.zip</p><p>Resource Software Recommended: Tracer v1.7.1,url: <a href="http://tree.bio.ed.ac.uk/software/tracer/">http://tree.bio.ed.ac.uk/software/tracer/</a> </p></li></ul><p></p> |
| distribution |
[
{
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"title": "N1C21_SRD06_strict_GMRF_200M_Nov9.log_.zip",
"format": "zip",
"mediaType": "application/zip",
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{
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{
"@type": "dcat:Distribution",
"title": "N1C32_SRD09_strict_GMRF_200M_May21.log_.zip",
"format": "zip",
"mediaType": "application/zip",
"downloadURL": "https://ndownloader.figshare.com/files/44532875"
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{
"@type": "dcat:Distribution",
"title": "N1C3_r1_hkyGamma4_GMRF_200M_May20.log_.zip",
"format": "zip",
"mediaType": "application/zip",
"downloadURL": "https://ndownloader.figshare.com/files/44532878"
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"@type": "dcat:Distribution",
"title": "N1P_SRD06_strict_GMRF_200M_Aug2.log_.zip",
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"mediaType": "application/zip",
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{
"@type": "dcat:Distribution",
"title": "N1classical_r1_SRD06_UCLN_GMRF_200M_May21.log_.zip",
"format": "zip",
"mediaType": "application/zip",
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]
|
| identifier | 10.15482/USDA.ADC/1528285 |
| keyword |
[
"ARS",
"BEAST",
"Bayesian statistics",
"Influenza A virus",
"NP103",
"Swine",
"data.gov",
"evolution",
"molecular substitution rate",
"neuraminidase",
"phylogenetic",
"rate of evolution"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2025-11-21 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "MultiPolygon", "coordinates": [[[[-82.345745265484, 9.8327239064169], [-83.164076507092, 7.7402148611428], [-85.836760997772, 9.4173793620844], [-86.289413273335, 11.018860560027], [-85.411022007465, 11.154495319768], [-83.253780305386, 11.031850314318], [-82.345745265484, 9.8327239064169]]], [[[-90.357213914394, 13.571259814305], [-89.156501591206, 14.593867742357], [-88.118993639946, 15.922493702258], [-79.930405318737, 21.028753398843], [-77.613800168037, 19.434517765207], [-73.612276911736, 20.117839630492], [-81.027136445045, 23.90774637848], [-79.595024585724, 27.116179878336], [-50.640728473663, 47.361000390678], [-74.956884384155, 75.555035919386], [-58.406581878662, 82.637318822619], [-76.563377380371, 84.115459571006], [-170.49639701843, 71.975163797827], [-174.56365585327, 55.62964345413], [-125.10432243347, 32.51272930836], [-105.14683127403, 18.209275138895], [-90.357213914394, 13.571259814305]]]]}"
|
| temporal | 1930-01-01/2020-09-03 |
| title | BEAST log data from: Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine |
