Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations
Colletotrichum shisoi is a fungal plant pathogen of Perilla frutescens, a mint species cultivated in some Asian countries but considered invasive in the United States. This dataset contains a new, highly contiguous genome sequence generated from the North American C. shisoi isolate FDWSRU 21-072, which has been proposed for use as a biological control agent of invasive P. frutescens. Long-read PacBio sequencing produced a nuclear genome assembly of 48 contigs and 86.9 Mb. Structural and functional gene annotations were generated with the FunAnnotate v1.8.16 pipeline. Repetitive contents were annotated using RepeatMasker v4.1.5. A complete mitochondrial genome was assembled using MitoHifi and Flye, and mitochondrial annotations were predicted using MFannot.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Fulcher, Michael, R.",
"hasEmail": "mailto:michael.fulcher@usda.gov"
}
|
| description | <p dir="ltr"><i>Colletotrichum shisoi</i> is a fungal plant pathogen of <i>Perilla frutescens</i>, a mint species cultivated in some Asian countries but considered invasive in the United States. This dataset contains a new, highly contiguous genome sequence generated from the North American <i>C. shisoi</i> isolate FDWSRU 21-072, which has been proposed for use as a biological control agent of invasive <i>P. frutescens</i>. Long-read PacBio sequencing produced a nuclear genome assembly of 48 contigs and 86.9 Mb. Structural and functional gene annotations were generated with the FunAnnotate v1.8.16 pipeline. Repetitive contents were annotated using RepeatMasker v4.1.5. A complete mitochondrial genome was assembled using MitoHifi and Flye, and mitochondrial annotations were predicted using MFannot.</p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.clusters.txt",
"format": "txt",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131343"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.cds-transcripts.fa",
"format": "fa",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131346"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.gff3",
"format": "gff3",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131352"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.proteins.fa",
"format": "fa",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131355"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.mrna-transcripts.fa",
"format": "fa",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131361"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.tbl",
"format": "tbl",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131364"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.annotations.txt",
"format": "txt",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131367"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.contigs.fsa",
"format": "fsa",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131373"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi.scaffolds.fa",
"format": "fa",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/53131376"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi_repeats.tbl",
"format": "tbl",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/57110222"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi_mitochondrial-genome.fasta",
"format": "fasta",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/57110231"
},
{
"@type": "dcat:Distribution",
"title": "Colletotrichum_shisoi_mitochondrial-annotations.txt",
"format": "txt",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/57110234"
}
]
|
| identifier | 10.15482/USDA.ADC/28628477.v3 |
| keyword |
[
"Colletotrichum shisoi",
"Perilla fruescens",
"Perilla mint",
"fungus",
"genome",
"invasive",
"plant pathogen",
"weed"
]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2025-08-25 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2025-03-19/2025-03-19 |
| title | Colletotrichum shisoi FDWSRU 21-072 nuclear and mitochondrial genome annotations |
