Cryptobiota metabarcoding using Autonomous Reef Monitoring Structure (ARMS) Deployed at Coral Reef Sites across PRIA from 2011 to 2015
The data described here includes cytochrome oxidase I (COI) DNA metabarcoding data collected from Autonomous Reef Monitoring Structures (ARMS). ARMS were deployed by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (formerly the Coral Reef Ecosystem Division) under the National Coral Reef Monitoring Program (NCRMP) at stationary climate monitoring sites and used to assess and monitor cryptic reef diversity in the Pacific Remote Island Areas (PRIA). Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS were designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner.
These data were gathered at specific reef sites across the PRIAs. ARMS units were set-up, deployed and recovered as described in the ARMS record in the related items section below. After ARMS were disassembled, different size fractions of samples and plate scrapings were preserved in ethanol for metabarcoding.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | non-public |
| contactPoint |
{
"fn": "Timmers, Molly A",
"@type": "vcard:Contact",
"hasEmail": "mailto:molly.timmers@noaa.gov"
}
|
| describedBy | https://www.ncbi.nlm.nih.gov/sra/ |
| describedByType | application/octet-steam |
| description | The data described here includes cytochrome oxidase I (COI) DNA metabarcoding data collected from Autonomous Reef Monitoring Structures (ARMS). ARMS were deployed by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (formerly the Coral Reef Ecosystem Division) under the National Coral Reef Monitoring Program (NCRMP) at stationary climate monitoring sites and used to assess and monitor cryptic reef diversity in the Pacific Remote Island Areas (PRIA). Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS were designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner. These data were gathered at specific reef sites across the PRIAs. ARMS units were set-up, deployed and recovered as described in the ARMS record in the related items section below. After ARMS were disassembled, different size fractions of samples and plate scrapings were preserved in ethanol for metabarcoding. |
| distribution |
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|
| identifier | gov.noaa.nmfs.inport:64270 |
| issued | 2017-01-01T00:00:00.000+00:00 |
| keyword |
[
"743",
"National Coral Reef Monitoring Program",
"DNA/RNA Sequencing",
"EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat",
"EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Autonomous Reef Monitoring Structure (ARMS)",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Biological",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology",
"EARTH SCIENCE > Oceans > Marine Biology > Cryptobiota",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Biodiversity",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Census",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates",
"INVERTEBRATE SPECIES",
"SPECIES IDENTIFICATION",
"SPECIES IDENTIFICATION - COUNT",
"biological",
"in situ",
"HI'IALAKAI",
"CORAL REEF STUDIES",
"Coral Reef Conservation Program",
"National Coral Reef Monitoring Program",
"US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division",
"COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Jarvis Island (00S160W0001)",
"COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Kingman Reef (06N162W0001)",
"COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Palmyra Atoll (05N162W0001)",
"COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Wake Atoll (19N167E0001)",
"OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Jarvis Island (00S160W0001)",
"OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Kingman Reef (06N162W0001)",
"OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Line Islands > Palmyra Atoll (05N162W0001)",
"OCEAN BASIN > Pacific Ocean > Central Pacific Ocean > Wake Atoll > Wake Atoll (19N167E0001)",
"Equatorial Pacific Ocean",
"Pacific Remote Islands Marine National Monument",
"ARMS",
"Autonomous Reef Monitoring Structures",
"ARMS",
"Autonomous Reef Monitoring Structure",
"CRED",
"CREP",
"CReef",
"Census of Marine Life",
"Coral Reef Ecosystem Division",
"Coral Reef Ecosystem Program",
"ESD",
"Ecosystem Sciences Division",
"PIFSC",
"Pacific Islands Fisheries Science Center",
"RAMP",
"Reef Assessment and Monitoring Program",
"cytochrome oxidase I",
"Triennial",
"PRIA",
"PRIMNM",
"Pacific Remote Island Areas",
"environmental DNA",
"metabarcoding",
"DOC/NOAA/NMFS/PIFSC > Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
"ARMS"
]
|
| landingPage | https://www.fisheries.noaa.gov/inport/item/64270 |
| language |
[]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2020-01-07T00:00:00.000+00:00 |
| publisher |
{
"name": "Pacific Islands Fisheries Science Center",
"@type": "org:Organization"
}
|
| references |
[
"https://www.fisheries.noaa.gov/inportserve/waf/noaa/nmfs/pifsc/dmp/pdf/64270.pdf"
]
|
| rights | otherRestrictions, unclassified |
| spatial | 166.65155,19.27116,166.59824,19.31654 |
| temporal | 2011-03-23T00:00:00+00:00/2014-03-19T00:00:00+00:00 |
| title | Cryptobiota metabarcoding using Autonomous Reef Monitoring Structure (ARMS) Deployed at Coral Reef Sites across PRIA from 2011 to 2015 |
