Data and code from: Denitrification genes play minor roles in fumonisin production and virulence in <i>Fusarium verticillioides</i>
This dataset contains all data and code necessary to reproduce the analyses, tables, and figures presented in the associated manuscript.The following files are included:Fumonisin_Bioassay_Rice_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the fumonisin bioassaySeedling_Disease_Assay_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the seedling growth and disease assayfumonisin_bioassay.Rmd: RMarkdown notebook with annotated R code needed to analyze the fumonisin bioassay datafumonisn_bioassay.html: rendered HTML output of the fumonisin bioassay notebookseedling_disease_assay.Rmd: RMarkdown notebook with annotated R code needed to analyze the seedling disease assay dataseedling_disease_assay.html: rendered HTML output of the seedling disease assay notebookdata_description.pdf: metadata document with column descriptions for each of the spreadsheetsThe following software and package versions were used:R version 4.3.1CmdStan version 2.33.1R packages:brms version 2.20.4cmdstanr version 0.5.3emmeans version 1.8.9tidybayes version 3.0.4bayestestR version 0.13.2
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Read, Quentin D.",
"hasEmail": "mailto:quentin.read@usda.gov"
}
|
| description | <p dir="ltr">This dataset contains all data and code necessary to reproduce the analyses, tables, and figures presented in the associated manuscript.</p><p dir="ltr">The following files are included:</p><ul><li>Fumonisin_Bioassay_Rice_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the fumonisin bioassay</li><li>Seedling_Disease_Assay_Trial_1.xlsx (and Trial_2.xlsx, Trial_3.xlsx): results from the three experimental runs of the seedling growth and disease assay</li><li>fumonisin_bioassay.Rmd: RMarkdown notebook with annotated R code needed to analyze the fumonisin bioassay data</li><li>fumonisn_bioassay.html: rendered HTML output of the fumonisin bioassay notebook</li><li>seedling_disease_assay.Rmd: RMarkdown notebook with annotated R code needed to analyze the seedling disease assay data</li><li>seedling_disease_assay.html: rendered HTML output of the seedling disease assay notebook</li><li>data_description.pdf: metadata document with column descriptions for each of the spreadsheets</li></ul><p dir="ltr">The following software and package versions were used:</p><ul><li>R version 4.3.1</li><li>CmdStan version 2.33.1</li><li>R packages:</li><li><ul><li>brms version 2.20.4</li><li>cmdstanr version 0.5.3</li><li>emmeans version 1.8.9</li><li>tidybayes version 3.0.4</li><li>bayestestR version 0.13.2</li></ul></li></ul><p><br></p> |
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|
| identifier | 10.15482/USDA.ADC/25504900.v1 |
| keyword |
[
"Fusarium verticillioides",
"denitrification",
"disease",
"fumonisin",
"fungi",
"nitrogen cycle",
"software code",
"virulence"
]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2026-01-23 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "Point", "coordinates": [-83.35804, 33.92859]}"
|
| temporal | 2018-06-01/2019-06-30 |
| title | Data and code from: Denitrification genes play minor roles in fumonisin production and virulence in <i>Fusarium verticillioides</i> |
