Data from: Genomic analysis of <i>Vanessa tameamea</i>, the threatened Hawaiian endemic butterfly, reveals population genetic structure relevant to conservation efforts
Scripts listed here exemplify those used in the assembly of the Vanessa tameamea genome (Hawaiian Kamehameha butterfly) as found in NCBI BioProjects PRJNA1029194 (female) and PRJNA1029239 (male). Reduced representation sequences from double digest Restriction Associated DNA (ddRAD) are included in BioProject PRJNA428520 and were used for population genetic analyses. All workflows and analyses except for the DAPC (Discriminant Analysis of Principal Components), PCA (Principal Component Analysis), and hierarchical Fst were performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and were installed via Conda. The remaining scripts were run in R.
Complete Metadata
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|---|---|
| accessLevel | public |
| bureauCode |
[
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|
| contactPoint |
{
"fn": "Arnold, Haley, E.",
"hasEmail": "mailto:arnoldhaley3@gmail.com"
}
|
| description | <p dir="ltr">Scripts listed here exemplify those used in the assembly of the <i>Vanessa tameamea</i> genome (Hawaiian Kamehameha butterfly) as found in NCBI BioProjects <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1029194/" target="_blank">PRJNA1029194</a> (female) and <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1029239/" rel="noreferrer" target="_blank">PRJNA1029239</a> (male). Reduced representation sequences from double digest Restriction Associated DNA (ddRAD) are included in BioProject <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA428520/" rel="noreferrer" target="_blank">PRJNA428520</a> and were used for population genetic analyses. All workflows and analyses except for the DAPC (Discriminant Analysis of Principal Components), PCA (Principal Component Analysis), and hierarchical Fst were performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and were installed via Conda. The remaining scripts were run in R.</p> |
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|
| identifier | 10.15482/USDA.ADC/28004405.v1 |
| keyword |
[
"Hawaii butterfly",
"Vanessa tameamea",
"conservation",
"genome assembly projects",
"genome assembly protocol",
"population genetics model",
"population genetics statistics"
]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2025-11-19 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2023-10-01/2023-10-01 |
| title | Data from: Genomic analysis of <i>Vanessa tameamea</i>, the threatened Hawaiian endemic butterfly, reveals population genetic structure relevant to conservation efforts |
