Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the same ancestral population. This model was applied to taurine and zebu animals to identify loci under selection. These two groups correspond to the main (and most ancestral) separation of domestic cattle, which in most but not all cases corresponds to animals adapted to tropical and temperate environments. The identification of such loci can aid in the identification of genes and genomic variants that are related to environmental adaptation and/or selection derived from human agro-pastoral activities. Resources in this dataset:Resource Title: Copies of B allele for BovineHD 770k SNP array for multiple cattle breeds spanning broad diversity. File Name: g.csv.gzResource Description: Table contains 777,962 rows, one for each SNP and 528 columns, 1 for each animal. A few animals are duplicated. Most animals have breed identified by a 3 letter code but a few do not. Breed abbreviations follow.
ANG – Angus
BMA – Beefmaster
BRM – Brahman
BSW – Brown Swiss
CHL – Charolais
GIR – Gir
GNS – Guernsey
HFD – Hereford
HOL – Holstein
JER – Jersey
LMS – Limousin
NEL – Nelore
NRC – Norwegian Red Cow
PMT – Piedmontese
RGU – Red Angus
RMG – Romagnola
SGT – Santa Gertrudis
SHK – Sheko
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Van Tassell, Curt",
"hasEmail": "mailto:curt.vantassell@usda.gov"
}
|
| description | <p>The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the same ancestral population. This model was applied to taurine and zebu animals to identify loci under selection. These two groups correspond to the main (and most ancestral) separation of domestic cattle, which in most but not all cases corresponds to animals adapted to tropical and temperate environments. The identification of such loci can aid in the identification of genes and genomic variants that are related to environmental adaptation and/or selection derived from human agro-pastoral activities. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Copies of B allele for BovineHD 770k SNP array for multiple cattle breeds spanning broad diversity.</p> <p>File Name: g.csv.gz</p><p>Resource Description: Table contains 777,962 rows, one for each SNP and 528 columns, 1 for each animal. A few animals are duplicated. Most animals have breed identified by a 3 letter code but a few do not. Breed abbreviations follow. ANG – Angus BMA – Beefmaster BRM – Brahman BSW – Brown Swiss CHL – Charolais GIR – Gir GNS – Guernsey HFD – Hereford HOL – Holstein JER – Jersey LMS – Limousin NEL – Nelore NRC – Norwegian Red Cow PMT – Piedmontese RGU – Red Angus RMG – Romagnola SGT – Santa Gertrudis SHK – Sheko </p></li></ul><p></p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "g.csv_2.gz",
"format": "gz",
"mediaType": "application/gzip",
"downloadURL": "https://ndownloader.figshare.com/files/44530010"
}
]
|
| identifier | 10.15482/USDA.ADC/1523112 |
| keyword |
[
"ARS",
"NP101",
"data.gov",
"genotypes",
"number of copies of B allele"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2025-11-21 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
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|
| temporal | 2013-12-01/2013-12-01 |
| title | Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping |
