Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i>
Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, Agrostis stolonifera". Both haplotype assemblies from the manuscript are combined. The genome sequence is the 'creep_bentv1.0_hap1_hap2.fasta' file which contains both haplotype assemblies from the manuscript combined. The haplotypes are also combined in files for gene annotation (creep_bentv1.0_hap1_hap2.gff), transcript sequences (creep_bentv1.0_hap1_hap2_cds.fasta), protein sequences (creep_bentv1.0_hap1_hap2_pep.fasta), and the transposable element annotation (creep_bentv1.0_hap1_hap2_TE_anno.gff). For usability, additional files are separated by haplotype for the gene annotation (creep_bentv1.0_hap1.gff and creep_bentv1.0_hap2.gff), transcript sequences (creep_bentv1.0_hap1_cds.fasta and creep_bentv1.0_hap2_cds.fasta), and protein sequences (creep_bentv1.0_hap1_pep.fasta and creep_bentv1.0_hap2_pep.fasta).
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Robbins, Matthew D.",
"hasEmail": "mailto:matthew.robbins@usda.gov"
}
|
| description | <p dir="ltr">Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-level genome assembly of creeping bentgrass,<i> </i><i>Agrostis stolonifera</i>". Both haplotype assemblies from the manuscript are combined. The genome sequence is the 'creep_bentv1.0_hap1_hap2.fasta' file which contains both haplotype assemblies from the manuscript combined. The haplotypes are also combined in files for gene annotation (creep_bentv1.0_hap1_hap2.gff), transcript sequences (creep_bentv1.0_hap1_hap2_cds.fasta), protein sequences (creep_bentv1.0_hap1_hap2_pep.fasta), and the transposable element annotation (creep_bentv1.0_hap1_hap2_TE_anno.gff). For usability, additional files are separated by haplotype for the gene annotation (creep_bentv1.0_hap1.gff and creep_bentv1.0_hap2.gff), transcript sequences (creep_bentv1.0_hap1_cds.fasta and creep_bentv1.0_hap2_cds.fasta), and protein sequences (creep_bentv1.0_hap1_pep.fasta and creep_bentv1.0_hap2_pep.fasta).</p> |
| distribution |
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|
| identifier | 10.15482/USDA.ADC/30081199.v3 |
| keyword |
[
"annotation",
"polyploidy",
"subgenomes",
"synteny",
"transposable elements"
]
|
| license | https://www.usa.gov/publicdomain/label/1.0/ |
| modified | 2026-01-22 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2021-02-08/2021-02-08 |
| title | Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i> |
