Data from: Supplementation with soluble or insoluble rice-bran fibers increases short-chain fatty acid producing bacteria in the gut microbiota <i>in vitro</i>
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) with additions of either soluble or insoluble fractions from rice bran or no addition controls (n=3 treatments.) Data collected include 16S rRNA gene amplicon sequencing and short chain fatty acid (SCFA) concentrations. Raw sequencing data can be found in the NCBI Sequence Read Archive associated with BioProject PRJNA1032541. Data here include sample metadata and SCFA concentrations.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Narrowe, Adrienne",
"hasEmail": "mailto:adrienne.narrowe@usda.gov"
}
|
| description | <p dir="ltr">The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) with additions of either soluble or insoluble fractions from rice bran or no addition controls (n=3 treatments.) Data collected include 16S rRNA gene amplicon sequencing and short chain fatty acid (SCFA) concentrations. Raw sequencing data can be found in the NCBI Sequence Read Archive associated with BioProject PRJNA1032541. Data here include sample metadata and SCFA concentrations. </p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Sample_metadata.csv",
"format": "csv",
"mediaType": "application/csv",
"downloadURL": "https://ndownloader.figshare.com/files/46436977"
},
{
"@type": "dcat:Distribution",
"title": "SCFA_processed.csv",
"format": "csv",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/46436980"
}
]
|
| identifier | 10.15482/USDA.ADC/25859593.v1 |
| keyword |
[
"16S rRNA sequencing data",
"ARS",
"NP306",
"Rice bran",
"SHIME",
"fiber",
"gut microbiome",
"in vitro fermentation"
]
|
| license | https://creativecommons.org/licenses/by/4.0/ |
| modified | 2025-05-02 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2020-01-01/2023-09-28 |
| title | Data from: Supplementation with soluble or insoluble rice-bran fibers increases short-chain fatty acid producing bacteria in the gut microbiota <i>in vitro</i> |
