Skip to main content
U.S. flag

An official website of the United States government

This site is currently in beta, and your feedback is helping shape its ongoing development.

Enhancement of RNA from FFPE v27.2

Published by U.S. EPA Office of Research and Development (ORD) | U.S. Environmental Protection Agency | Metadata Last Checked: August 02, 2025 | Last Modified: 2019-06-28
This data set is composed of Tables, Figures, zip file containing the whole manuscript individual datasets. This dataset is associated with the following publication: Wehmas, L., C. Wood, B. Chorley, C. Yauk, G. Nelson, and S. Hester. Enhanced Quality Metrics for Assessing RNA Derived From Archival Formalin-Fixed Paraffin-Embedded Tissue Samples. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 170(2): 357-373, (2019).

Find Related Datasets

Click any tag below to search for similar datasets

Complete Metadata
accessLevel public
bureauCode 
                                            [
  "020:00"
]
contactPoint 
                                            {
  "fn": "Susan Hester",
  "hasEmail": "mailto:hester.susan@epa.gov"
}
description This data set is composed of Tables, Figures, zip file containing the whole manuscript individual datasets. This dataset is associated with the following publication: Wehmas, L., C. Wood, B. Chorley, C. Yauk, G. Nelson, and S. Hester. Enhanced Quality Metrics for Assessing RNA Derived From Archival Formalin-Fixed Paraffin-Embedded Tissue Samples. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 170(2): 357-373, (2019).
distribution 
                                            [
  {
    "title": "Enhancement of RNA from FFPE_v27.2_clean_20171115.docx",
    "mediaType": "application/vnd.openxmlformats-officedocument.wordprocessingml.document",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Enhancement%20of%20RNA%20from%20FFPE_v27.2_clean_20171115.docx"
  },
  {
    "title": "Enhancement of RNA from FFPE_v27.2_marked_20171115.docx",
    "mediaType": "application/vnd.openxmlformats-officedocument.wordprocessingml.document",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Enhancement%20of%20RNA%20from%20FFPE_v27.2_marked_20171115.docx"
  },
  {
    "title": "Table_1_DEG_overlap_20171024.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_1_DEG_overlap_20171024.xlsx"
  },
  {
    "title": "Table_2_IPA_overlap_20170731.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_2_IPA_overlap_20170731.xlsx"
  },
  {
    "title": "Table_S10_Canonical_pathways_ranked_20171031_rev.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S10_Canonical_pathways_ranked_20171031_rev.xlsx"
  },
  {
    "title": "Table_S11_Linear_regression_analysis_pathway_upstream_regulators_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S11_Linear_regression_analysis_pathway_upstream_regulators_20171031.xlsx"
  },
  {
    "title": "Table_S12_Upstream_regulator_rank_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S12_Upstream_regulator_rank_20171031.xlsx"
  },
  {
    "title": "Table_S13_Casual_network_analysis_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S13_Casual_network_analysis_20171031.xlsx"
  },
  {
    "title": "Table_S1_triplex_RT-qPCR_primers_20170829.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S1_triplex_RT-qPCR_primers_20170829.xlsx"
  },
  {
    "title": "Table_S2_Library_prep_fragmentation_times_20170731.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S2_Library_prep_fragmentation_times_20170731.xlsx"
  },
  {
    "title": "Table_S3_RNA_and_RNA_quality_20171031_clean.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S3_RNA_and_RNA_quality_20171031_clean.xlsx"
  },
  {
    "title": "Table_S4_Actb_amplicon_summary_20170731.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S4_Actb_amplicon_summary_20170731.xlsx"
  },
  {
    "title": "Table_S5_sequencing_quality_metrics_20171031_clean.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S5_sequencing_quality_metrics_20171031_clean.xlsx"
  },
  {
    "title": "Table_S6_total_and_unique_raw_gene_ct_summary_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S6_total_and_unique_raw_gene_ct_summary_20171031.xlsx"
  },
  {
    "title": "Table_S7_differentially_expressed_genes_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S7_differentially_expressed_genes_20171031.xlsx"
  },
  {
    "title": "Table_S8_overlapping_deg_lists_vs_fr_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S8_overlapping_deg_lists_vs_fr_20171031.xlsx"
  },
  {
    "title": "Table_S9_raw_normalized_biomarker_counts_20171031.xlsx",
    "mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S9_raw_normalized_biomarker_counts_20171031.xlsx"
  },
  {
    "title": "Wehmas_to_Linda_Adams Fig&text&tables.zip",
    "mediaType": "application/x-zip-compressed",
    "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1506036/Wehmas_to_Linda_Adams%20Fig%26text%26tables.zip"
  }
]
identifier https://doi.org/10.23719/1506036
keyword 
                                            [
  "quality metrics"
]
license https://pasteur.epa.gov/license/sciencehub-license.html
modified 2019-06-28
programCode 
                                            [
  "020:095"
]
publisher 
                                            {
  "name": "U.S. EPA Office of Research and Development (ORD)",
  "subOrganizationOf": {
    "name": "U.S. Environmental Protection Agency",
    "subOrganizationOf": {
      "name": "U.S. Government"
    }
  }
}
references 
                                            [
  "https://doi.org/10.1093/toxsci/kfz113"
]
rights 
                                            null
title Enhancement of RNA from FFPE v27.2

data.gov

An official website of the GSA's Technology Transformation Services

Looking for U.S. government information and services?
Visit USA.gov