Factors influencing distribution of Coccidioides immitis in soil, Washington State, 2016 — Data release
Coccidioides immitis and Coccidioides posadasii are causative agents of Valley fever, a serious fungal disease endemic to regions with hot, arid climate in the United States, Mexico, and Central and South America. The environmental niche of Coccidioides spp. is not well defined, and it remains unknown whether these fungi are primarily associated with rodents or grow as saprotrophs in soil. To better understand the environmental reservoir of these pathogens, we used a systematic soil sampling approach, quantitative PCR (qPCR), culture, whole-genome sequencing, and soil chemical analysis to identify factors associated with the presence of C. immitis at a known colonization site in Washington State linked to a human case in 2010. This data set presents qPCR results of soil samples and analytical chemistry results of deionized water leachates of the same soil samples.
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"010:12"
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|
| contactPoint |
{
"fn": "Geoffrey S Plumlee",
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"hasEmail": "mailto:gplumlee@usgs.gov"
}
|
| description | Coccidioides immitis and Coccidioides posadasii are causative agents of Valley fever, a serious fungal disease endemic to regions with hot, arid climate in the United States, Mexico, and Central and South America. The environmental niche of Coccidioides spp. is not well defined, and it remains unknown whether these fungi are primarily associated with rodents or grow as saprotrophs in soil. To better understand the environmental reservoir of these pathogens, we used a systematic soil sampling approach, quantitative PCR (qPCR), culture, whole-genome sequencing, and soil chemical analysis to identify factors associated with the presence of C. immitis at a known colonization site in Washington State linked to a human case in 2010. This data set presents qPCR results of soil samples and analytical chemistry results of deionized water leachates of the same soil samples. |
| distribution |
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| identifier | http://datainventory.doi.gov/id/dataset/USGS_615a1567d34e0df5fba0ab44 |
| keyword |
[
"USGS:615a1567d34e0df5fba0ab44",
"environment",
"environmental health (human)",
"geochemistry",
"soil chemistry",
"soil sciences"
]
|
| modified | 2021-11-04T00:00:00Z |
| publisher |
{
"name": "U.S. Geological Survey",
"@type": "org:Organization"
}
|
| spatial | -124.7600, 45.5400, -116.9100, 49.0000 |
| theme |
[
"Geospatial"
]
|
| title | Factors influencing distribution of Coccidioides immitis in soil, Washington State, 2016 — Data release |
