Genome In A Bottle - v2.0 Genome Stratifications (Deprecated)

Published by National Institute of Standards and Technology | National Institute of Standards and Technology | Metadata Last Checked: August 02, 2025 | Last Modified: 2020-03-05 00:00:00

These stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls. These v2.0 stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls. v2.0 stratifications have been deprecated and replaced by v3.0 genome-stratifications.

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Human genomics; DNA sequencing; Reference materials

Complete Metadata

@type	dcat:Dataset
accessLevel	public
accrualPeriodicity	irregular
bureauCode	[ "006:55" ]
contactPoint	{ "fn": "Justin Zook", "hasEmail": "mailto:justin.zook@nist.gov" }
description	These stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls. These v2.0 stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls. v2.0 stratifications have been deprecated and replaced by v3.0 genome-stratifications.
distribution	[ { "title": "DOI Access for Genome In A Bottle - Genome Stratifications", "accessURL": "https://doi.org/10.18434/M32190" }, { "title": "GIAB FTP Site", "accessURL": "https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release", "description": "NIH-NCBI hosted FTP site provided to facilitate user access. Files on the FTP site are subject to change whereas files on data.nist.gov archived version of the files." }, { "title": "Code repository", "accessURL": "https://github.com/genome-in-a-bottle/genome-stratifications", "description": "Version controlled repository with code used to generate the stratification files." }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_notinrefseq_union_cds.bed.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_notinrefseq_union_cds.bed.gz.sha256" }, { "mediaType": "application/gzip", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_refseq_cds.bed.gz" }, { "mediaType": "text/plain", "downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_refseq_cds.bed.gz.sha256" }, { "mediaType": 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identifier	ark:/88434/mds2-2190
issued	2020-07-20
keyword	[ "Human genomics; DNA sequencing; Reference materials" ]
landingPage	https://data.nist.gov/od/id/mds2-2190
language	[ "en" ]
license	https://www.nist.gov/open/license
modified	2020-03-05 00:00:00
programCode	[ "006:045" ]
publisher	{ "name": "National Institute of Standards and Technology", "@type": "org:Organization" }
references	[ "https://doi.org/10.1038/s41587-019-0054-x" ]
theme	[ "Bioscience:Genomic measurements", "Health:Precision medicine" ]
title	Genome In A Bottle - v2.0 Genome Stratifications (Deprecated)