Halyomorpha halys Official Gene Set v1.2

This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1 (https://doi.org/10.15482/USDA.ADC/1504240) to the coordinates of genome assembly GCA_000696795.3 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000696795.3) using https://github.com/NAL-i5K/coordinates_conversion/. The original OGSv1.0 is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/; ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_Hhal_1.0), with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). Manual annotations performed by the community were downloaded from Apollo, QC'd, and merged with NCBI Halyomorpha halys Annotation Release 100 using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4). The resulting merged dataset was formatted for ingest into the i5k Workspace and GenBank databases, resulting in Halyomorpha halys Official Gene Set (OGS) v1.0. Halyomorpha Official Gene Set halhal_OGSv1.1 is a minor update of halhal_OGSv1.0: Alias attributes were added to all manually annotated cathepsin models; six models from contaminated scaffolds were removed; and notes were added to 3 models located on possibly contaminated scaffolds. Resources in this dataset:Resource Title: Halymorpha halys Official Gene Set OGSv1.2. File Name: halhal_OGSv1.2.tar.gzResource Description: The attached tar.gz archive (halhal_OGSv1.2.tar.gz) contains the following files: halhal_OGSv1.2.gff. Gff3 of all gene predictions of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_CDS.fa. CDS sequences of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_pep.fa. Amino acid sequences of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_trans.fa. Transcript sequences of Halymorpha halys genome annotations OGSv1.2 readme. Readme file describing Halymorpha halys genome annotations OGSv1.2

                                            [
  "005:18"
]
                                        

                                            {
  "fn": "Sparks, Michael",
  "hasEmail": "mailto:Michael.Sparks2@USDA.GOV"
}
                                        

                                            [
  {
    "@type": "dcat:Distribution",
    "title": "halhal_OGSv1.2.tar.gz",
    "format": "gz",
    "mediaType": "application/x-gzip",
    "downloadURL": "https://ndownloader.figshare.com/files/44291273"
  }
]
                                        

                                            [
  "ARS",
  "Halyomorpha halys",
  "data.gov",
  "genome annotation",
  "genome assembly",
  "sequence analysis"
]
                                        

                                            [
  "005:040"
]
                                        

                                            {
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
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