Hawaiian Islands Hawaiian hoary bat genome assembly data, 2009-2015
This dataset contains the reference genome assembly, created from 23 Hawaiian hoary bats collected across the four Hawaiian Islands, Hawaii, Maui, Oahu, and Kauai. These data were collected in order to examine the phylogenetic history and patterns of genetic variation in the Hawaiian hoary bat. The raw sequencing data are deposited to National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under accession PRJNA559902. The data are archived in GenBank at the following URL: https://www.ncbi.nlm.nih.gov/bioproject/559902.
The data are stored in two files, one in a text-based FASTA format (HHB genome 2009-2015.fa) and the other in general feature format (HHB genome features 2009-2015.gff), both readable with text editors (e.g., Notepad) or text-processing/scripting tools (e.g., R or Python).
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"010:12"
]
|
| contactPoint |
{
"fn": "Corinna Pinzari",
"@type": "vcard:Contact",
"hasEmail": "mailto:cpinzari@usgs.gov"
}
|
| description | This dataset contains the reference genome assembly, created from 23 Hawaiian hoary bats collected across the four Hawaiian Islands, Hawaii, Maui, Oahu, and Kauai. These data were collected in order to examine the phylogenetic history and patterns of genetic variation in the Hawaiian hoary bat. The raw sequencing data are deposited to National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under accession PRJNA559902. The data are archived in GenBank at the following URL: https://www.ncbi.nlm.nih.gov/bioproject/559902. The data are stored in two files, one in a text-based FASTA format (HHB genome 2009-2015.fa) and the other in general feature format (HHB genome features 2009-2015.gff), both readable with text editors (e.g., Notepad) or text-processing/scripting tools (e.g., R or Python). |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Digital Data",
"format": "XML",
"accessURL": "https://doi.org/10.5066/P9OJIVE6",
"mediaType": "application/http",
"description": "Landing page for access to the data"
},
{
"@type": "dcat:Distribution",
"title": "Original Metadata",
"format": "XML",
"mediaType": "text/xml",
"description": "The metadata original format",
"downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.5f3abc4c82ce8df5b6c4079a.xml"
}
]
|
| identifier | http://datainventory.doi.gov/id/dataset/USGS_5f3abc4c82ce8df5b6c4079a |
| keyword |
[
"Hawaii Island",
"Hawaiian Islands",
"Hawaiian hoary bat",
"Kauai Island",
"Lasiurus semotus",
"Maui Island",
"Oahu Island",
"USGS:5f3abc4c82ce8df5b6c4079a",
"adaptation",
"biota",
"genetic divergence",
"genome assembly",
"island colonization",
"island populations"
]
|
| modified | 2020-09-02T00:00:00Z |
| publisher |
{
"name": "U.S. Geological Survey",
"@type": "org:Organization"
}
|
| spatial | -160.35, 18.8, -154.65, 22.6 |
| theme |
[
"Geospatial"
]
|
| title | Hawaiian Islands Hawaiian hoary bat genome assembly data, 2009-2015 |
