Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6 (https://doi.org/10.5281/zenodo.5015109), hosted by the i5k Workspace@NAL (https://i5k.nal.usda.gov/). Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review. Resources in this dataset:Resource Title: Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES. File Name: Rhyzopertha-dominica-manual-annotations-presubmission.tar.gzResource Description: The files contained within this directory are manual annotations from the Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6, hosted by the i5k Workspace@NAL. Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review.
Annotations.cdna.fasta.gz: cDNA sequences of the manual annotations
Annotations.cds.fasta.gz: coding (CDS) sequences of the manual annotations
Annotations.gff3.gz: manual annotations in the GFF3 format.
Annotations.peptide.fasta.gz: polypeptide sequences of the manual annotations.
RdoDt3_Drdd8_decomES.fasta.gz: The genome assembly that the manual annotations are based on.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Oppert, Brenda",
"hasEmail": "mailto:bso@ksu.edu"
}
|
| description | <p>This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6 (<a href="https://doi.org/10.5281/zenodo.5015109">https://doi.org/10.5281/zenodo.5015109</a>), hosted by the i5k Workspace@NAL (<a href="https://i5k.nal.usda.gov/">https://i5k.nal.usda.gov/</a>). Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.</p> <p>File Name: Rhyzopertha-dominica-manual-annotations-presubmission.tar.gz</p><p>Resource Description: The files contained within this directory are manual annotations from the Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6, hosted by the i5k Workspace@NAL. Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review. </p> <ul> <li>Annotations.cdna.fasta.gz: cDNA sequences of the manual annotations</li> <li>Annotations.cds.fasta.gz: coding (CDS) sequences of the manual annotations</li> <li>Annotations.gff3.gz: manual annotations in the GFF3 format.</li> <li>Annotations.peptide.fasta.gz: polypeptide sequences of the manual annotations.</li> <li>RdoDt3_Drdd8_decomES.fasta.gz: The genome assembly that the manual annotations are based on.</li></ul><p></p></li> </ul> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Rhyzopertha-dominica-manual-annotations-presubmission.tar.gz",
"format": "gz",
"mediaType": "application/x-gzip",
"downloadURL": "https://ndownloader.figshare.com/files/44531234"
}
]
|
| identifier | 10.15482/USDA.ADC/1524749 |
| keyword |
[
"ARS",
"Insects",
"Rhyzopertha dominica",
"data.gov",
"genome annotation",
"i5k"
]
|
| license | https://creativecommons.org/licenses/by-sa/4.0/ |
| modified | 2025-11-21 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| spatial |
"{"type": "Point", "coordinates": [-96.6297555, 39.190887]}"
|
| temporal | 2022-03-04/2022-03-04 |
| title | Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES |
