National Coral Reef Monitoring Program: Benthic Cover from Annotated Benthic Images Collected During Photoquadrat Surveys at Climate Stations across the Pacific Remote Island Areas since 2014
This data has been combined into a US Pacific-wide InPort record: https://www.fisheries.noaa.gov/inport/item/78600.
The coral reef benthic community data described here result from the annotation (classification) of benthic images collected during photoquadrat surveys conducted by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD, formerly the Coral Reef Ecosystem Division) as part of NOAA's ongoing National Coral Reef Monitoring Program (NCRMP). The photoquadrat surveys were conducted at coral reef sites according to protocols established by ESD and NCRMP during ESD-led NCRMP missions to the islands and atolls of the Pacific Remote Island Areas (PRIA) from 2014, 2018, and 2023.
SCUBA divers conducted benthic photoquadrat surveys at permanent sites established in coral reef habitats by ESD. A select number of these sites were chosen in hard-bottom habitat at ~15-m depths, and a subset of the permanent sites (climate stations) were established at north, south, east, and west points around each of the islands and atolls. The divers estimated and delineated each site's rectangular perimeter by temporarily placing measuring tapes with 1-m markers starting from a permanently installed reference stake on the reef. Along the nearshore 10-m side of the survey site and the downslope 5-m side, the measuring tapes marked every meter of the L-shaped 15-m transect used for photoquadrat documentation. The divers photographed the reef at 1-m intervals on both sides of the 15-m tape, generating 30 photographs per survey site.
The benthic habitat images were quantitatively analyzed using Coral Point Count with Excel extensions (CPCe; Kohler and Gill, 2006) software from 2010-2014 and the web-based annotation tool, CoralNet (Beijbom et al. 2015), from 2015 to present. Ten points were randomly overlaid on each image and human analysts identified the organism or type of substrate beneath, with 300 annotations (points) generated per site. Benthic elements falling under each point were identified to genus/morphology for hard corals, and to genus/functional group for algae, invertebrates, and other taxa following Lozada-Misa et al. (2017). In general, the analysis resulted in three levels of benthic community data, including taxa group Tier 1 (e.g., coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Coral = massive hard coral, branching hard coral, foliose hard coral, encrusting hard coral, etc.; Macroalga = upright macroalgae), and Tier 3 (e.g., Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). If Tier 3 resolution is not possible, the next finest resolution is used.. These benthic data can ultimately be used to produce estimates of relative abundance (percentage of benthic cover), frequency of occurrence, benthic community taxonomic composition, and relative generic richness.
Complete Metadata
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|---|---|
| accessLevel | non-public |
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| description | This data has been combined into a US Pacific-wide InPort record: https://www.fisheries.noaa.gov/inport/item/78600. The coral reef benthic community data described here result from the annotation (classification) of benthic images collected during photoquadrat surveys conducted by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD, formerly the Coral Reef Ecosystem Division) as part of NOAA's ongoing National Coral Reef Monitoring Program (NCRMP). The photoquadrat surveys were conducted at coral reef sites according to protocols established by ESD and NCRMP during ESD-led NCRMP missions to the islands and atolls of the Pacific Remote Island Areas (PRIA) from 2014, 2018, and 2023. SCUBA divers conducted benthic photoquadrat surveys at permanent sites established in coral reef habitats by ESD. A select number of these sites were chosen in hard-bottom habitat at ~15-m depths, and a subset of the permanent sites (climate stations) were established at north, south, east, and west points around each of the islands and atolls. The divers estimated and delineated each site's rectangular perimeter by temporarily placing measuring tapes with 1-m markers starting from a permanently installed reference stake on the reef. Along the nearshore 10-m side of the survey site and the downslope 5-m side, the measuring tapes marked every meter of the L-shaped 15-m transect used for photoquadrat documentation. The divers photographed the reef at 1-m intervals on both sides of the 15-m tape, generating 30 photographs per survey site. The benthic habitat images were quantitatively analyzed using Coral Point Count with Excel extensions (CPCe; Kohler and Gill, 2006) software from 2010-2014 and the web-based annotation tool, CoralNet (Beijbom et al. 2015), from 2015 to present. Ten points were randomly overlaid on each image and human analysts identified the organism or type of substrate beneath, with 300 annotations (points) generated per site. Benthic elements falling under each point were identified to genus/morphology for hard corals, and to genus/functional group for algae, invertebrates, and other taxa following Lozada-Misa et al. (2017). In general, the analysis resulted in three levels of benthic community data, including taxa group Tier 1 (e.g., coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Coral = massive hard coral, branching hard coral, foliose hard coral, encrusting hard coral, etc.; Macroalga = upright macroalgae), and Tier 3 (e.g., Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). If Tier 3 resolution is not possible, the next finest resolution is used.. These benthic data can ultimately be used to produce estimates of relative abundance (percentage of benthic cover), frequency of occurrence, benthic community taxonomic composition, and relative generic richness. |
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|
| identifier | gov.noaa.nmfs.inport:36148 |
| issued | 2016-12-01T00:00:00.000+00:00 |
| keyword |
[
"DOC/NOAA/NMFS/PIFSC/ESD > Ecosystem Sciences Division, Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
"EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > COMMUNITY DYNAMICS",
"EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > BENTHIC",
"EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF",
"743",
"National Coral Reef Monitoring Program",
"Numeric Data Sets > Benthic",
"EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat",
"EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat",
"EARTH SCIENCE > Biosphere > Microbiota > Blue-green Algae",
"EARTH SCIENCE > Biosphere > Vegetation > Algae > Crustose Coralline Algae",
"EARTH SCIENCE > Biosphere > Vegetation > Algae > Encrusting Macroalgae",
"EARTH SCIENCE > Biosphere > Vegetation > Algae > Turf Algae",
"EARTH SCIENCE > Biosphere > Zoology > Corals",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Photographic Analysis",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Benthic biology",
"EARTH SCIENCE > Oceans > Marine Biology > Coral",
"EARTH SCIENCE > Oceans > Marine Biology > Coral Communities",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates",
"EARTH SCIENCE > Oceans > Ocean Chemistry > Climate Change",
"BENTHIC COMMUNITIES",
"BENTHIC SPECIES",
"BENTHIC SPECIES - TAXA IDENTITIES",
"machine-learning algorithm",
"photograph",
"benthic",
"other",
"visual estimate",
"HI'IALAKAI",
"RAINIER",
"CORAL REEF STUDIES",
"Coral Reef Conservation Program",
"National Coral Reef Monitoring Program",
"Pacific Reef and Assessment Monitoring Program",
"US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division",
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"COUNTRY/TERRITORY > United States of America > USA Minor Outlying Islands > Jarvis Island (00S160W0001)",
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"Central Pacific Ocean",
"Equatorial Pacific Ocean",
"Pacific Remote Islands Marine National Monument",
"CRED",
"CREP",
"Coral Point Count",
"Coral Reef Ecosystem Division",
"Coral Reef Ecosystem Program",
"CoralNet",
"ESD",
"Ecosystem Sciences Division",
"PIFSC",
"Pacific Islands Fisheries Science Center",
"RAMP",
"Reef Assessment and Monitoring Program",
"robot-assisted annotations",
"PRIA",
"PRIMNM",
"Pacific Remote Island Areas",
"DOC/NOAA/NMFS/PIFSC > Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
"Pacific Remote Island Areas"
]
|
| landingPage | https://www.fisheries.noaa.gov/inport/item/36148 |
| language |
[]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2024-03-01T00:00:00.000+00:00 |
| publisher |
{
"name": "Pacific Islands Fisheries Science Center",
"@type": "org:Organization"
}
|
| references |
[
"https://www.fisheries.noaa.gov/inportserve/waf/noaa/nmfs/pifsc/dmp/pdf/36148.pdf"
]
|
| rights | otherRestrictions, unclassified |
| spatial | -159.97881,-0.38241,-176.624,16.76343 |
| temporal | 2014-03-16T00:00:00+00:00/2014-03-19T00:00:00+00:00 |
| title | National Coral Reef Monitoring Program: Benthic Cover from Annotated Benthic Images Collected During Photoquadrat Surveys at Climate Stations across the Pacific Remote Island Areas since 2014 |
