OTUshuff
OTUshuff is a set of tools written in Perl to identify and correct for the presence of pseudo-diversity in contrasts between microbial communities. The variably weighted Odum dissimilarity (DwOdum) allows for down-weighting the influence of either abundant or rare taxa in calculating a measure of similarity between two communities. We show that down-weighting the influence of rare taxa can be used to minimize pseudo b-diversity arising from incomplete sampling. Down-weighting the influence of abundant taxa can increase the sensitivity of hypothesis testing. OTUshuff is an associated test for identifying the presence of pseudo-diversity in pairwise community contrasts. Resources in this dataset:Resource Title: OTUshuff. File Name: Web Page, url: https://www.ars.usda.gov/research/software/download/?softwareid=462&modecode=30-12-30-15 download page
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Manter, Daniel K.",
"hasEmail": "mailto:Daniel.Manter@ars.usda.gov"
}
|
| description | <p>OTUshuff is a set of tools written in Perl to identify and correct for the presence of pseudo-diversity in contrasts between microbial communities. The variably weighted Odum dissimilarity (DwOdum) allows for down-weighting the influence of either abundant or rare taxa in calculating a measure of similarity between two communities. We show that down-weighting the influence of rare taxa can be used to minimize pseudo b-diversity arising from incomplete sampling. Down-weighting the influence of abundant taxa can increase the sensitivity of hypothesis testing. OTUshuff is an associated test for identifying the presence of pseudo-diversity in pairwise community contrasts. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: OTUshuff.</p> <p>File Name: Web Page, url: <a href="https://www.ars.usda.gov/research/software/download/?softwareid=462&modecode=30-12-30-15">https://www.ars.usda.gov/research/software/download/?softwareid=462&modecode=30-12-30-15</a> </p><p>download page</p></li></ul><p></p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "https://www.ars.usda.gov/research/software/download/?softwareid=462&modecode=30-12-30-15",
"mediaType": "text/html",
"downloadURL": "https://www.ars.usda.gov/research/software/download/?softwareid=462&modecode=30-12-30-15"
}
]
|
| identifier | 10113/AA22558 |
| keyword |
[
"computer software",
"organisms",
"species diversity"
]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2024-02-13 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| title | OTUshuff |
