Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology”
Raw sequencing data as generated by the five different methods used are provided for each of the three samples used in the comparison. The files are in FASTQ format as exported from the Oxford Nanopore’s MK1C using MinION flowcells. Files are labeled according to the method (as described in the paper) and the Sample ID). The MK1C exports data in blocks of 6000 reads per FASTQ file and all the FASTQ files from each method and sample are grouped in a common folder.
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"010:12"
]
|
| contactPoint |
{
"fn": "Hon S Ip",
"@type": "vcard:Contact",
"hasEmail": "mailto:hip@usgs.gov"
}
|
| description | Raw sequencing data as generated by the five different methods used are provided for each of the three samples used in the comparison. The files are in FASTQ format as exported from the Oxford Nanopore’s MK1C using MinION flowcells. Files are labeled according to the method (as described in the paper) and the Sample ID). The MK1C exports data in blocks of 6000 reads per FASTQ file and all the FASTQ files from each method and sample are grouped in a common folder. |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Digital Data",
"format": "XML",
"accessURL": "https://doi.org/10.5066/P93VXVGO",
"mediaType": "application/http",
"description": "Landing page for access to the data"
},
{
"@type": "dcat:Distribution",
"title": "Original Metadata",
"format": "XML",
"mediaType": "text/xml",
"description": "The metadata original format",
"downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.638a4df0d34ed907bf7907ea.xml"
}
]
|
| identifier | http://datainventory.doi.gov/id/dataset/USGS_638a4df0d34ed907bf7907ea |
| keyword |
[
"Emerging Infectious Disease",
"Highly Pathogenic Avian Influenza Virus",
"Methods Comparison",
"Methods Development",
"MinION",
"Nanopore sequencing",
"Next Generation Sequencing",
"Pathogen Discovery",
"USGS:638a4df0d34ed907bf7907ea",
"avian influenza",
"biota"
]
|
| modified | 2023-02-17T00:00:00Z |
| publisher |
{
"name": "U.S. Geological Survey",
"@type": "org:Organization"
}
|
| spatial | -89.485745, 43.046374, -89.483192, 43.050278 |
| theme |
[
"Geospatial"
]
|
| title | Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology” |
