Sequence-based allelic variations and frequencies for 22 autosomal STR loci in the Lebanese population - Supplementary material
This data repository is meant to provide the supplementary files, tables, and figures included in the peer-reviewed research article entitled: "Sequence-based allelic variations and frequencies for 22 autosomal STR Loci in the Lebanese population". The article can be found at the following link (https://doi.org/10.1016/j.fsigen.2023.102872) and describes the sequencing of the 22 autosomal Short Tandem Repeat (aSTR) loci, using the PowerSeq 46GY System Prototype, in 195 individuals of self-reported Lebanese admixed ancestry. The supplemental files contain the sequence strings for each allele at each autosomal STR locus, length- and sequence- based allelic frequencies, quality control metrics for the sequencing runs, flanking region polymorphisms, as well as population and forensic genetic statistics. Any future changes to the supplements will be listed in the "Change Log" tab within each spreadsheet.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| accrualPeriodicity | irregular |
| bureauCode |
[
"006:55"
]
|
| contactPoint |
{
"fn": "Sarah Riman",
"hasEmail": "mailto:sarah.riman@nist.gov"
}
|
| description | This data repository is meant to provide the supplementary files, tables, and figures included in the peer-reviewed research article entitled: "Sequence-based allelic variations and frequencies for 22 autosomal STR Loci in the Lebanese population". The article can be found at the following link (https://doi.org/10.1016/j.fsigen.2023.102872) and describes the sequencing of the 22 autosomal Short Tandem Repeat (aSTR) loci, using the PowerSeq 46GY System Prototype, in 195 individuals of self-reported Lebanese admixed ancestry. The supplemental files contain the sequence strings for each allele at each autosomal STR locus, length- and sequence- based allelic frequencies, quality control metrics for the sequencing runs, flanking region polymorphisms, as well as population and forensic genetic statistics. Any future changes to the supplements will be listed in the "Change Log" tab within each spreadsheet. |
| distribution |
[
{
"title": "Supplementary File 1 - STRait Razor v3 Config",
"mediaType": "application/octet-stream",
"description": "STRait Razor v3 configuration file for the 22 autosomal",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20File%201.config"
},
{
"title": "Supplementary File 2 - Sequence Ranges",
"mediaType": "text/plain",
"description": "Sequence ranges for the comparison of the PowerSeq 46GY kit to the ForenSeq Signature kit",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20File%202.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/2867_README.txt"
},
{
"title": "MDS plot for Lebanese and four U.S. populations",
"mediaType": "application/vnd.openxmlformats-officedocument.presentationml.presentation",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Figure%201.pptx"
},
{
"title": "Population tree for Lebanese and four U.S. populations",
"mediaType": "application/vnd.openxmlformats-officedocument.presentationml.presentation",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Figure%202.pptx"
},
{
"title": "Lebanese population structure using unsupervised clustering",
"mediaType": "application/vnd.openxmlformats-officedocument.presentationml.presentation",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Figure%203.pptx"
},
{
"title": "STRait Razor v3 configuration file for the 22 autosomal STRs identified by the PowerSeq 46GY assay",
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20File%201.config"
},
{
"title": "GRCh38 coordinate ranges used to adjust the sequences identified by both PowerSeq 46GY and ForenSeq Signature kits",
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20File%202.txt"
},
{
"title": "Quality control metrics for the sequencing runs",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%201.xlsx"
},
{
"title": "Supplementary Table 1. Quality control metrics for the sequencing runs",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%201.xlsx"
},
{
"title": "Linkage disequilibrium",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%2010.xlsx"
},
{
"title": "Supplementary Table 10. Linkage disequilibrium",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%2010.xlsx"
},
{
"title": "AMOVA test among and within the 5 studied populations",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%2011.xlsx"
},
{
"title": "Locus-by-locus FST and p-values",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%2012.xlsx"
},
{
"title": "Pairwise FST estimates and permutation test across five populations",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%2013.xlsx"
},
{
"title": "Average coverage of allelic sequences",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%202.xlsx"
},
{
"title": "Average Hb across sequencing runs",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%203.xlsx"
},
{
"title": "Supplementary Table 3. Average Hb across sequencing runs",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%203.xlsx"
},
{
"title": "Sequence-based allelic frequencies",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%204.xlsx"
},
{
"title": "Supplementary Table 4. Sequence-based allelic frequencies",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%204.xlsx"
},
{
"title": "Allelic gains by sequencing",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%205.xlsx"
},
{
"title": "Supplementary Table 5. Allelic gains by sequencing",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%205.xlsx"
},
{
"title": "Flanking region polymorphisms",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%206.xlsx"
},
{
"title": "Supplementary Table 6. Flanking region polymorphisms",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%206.xlsx"
},
{
"title": "Length-based allelic frequencies",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%207.xlsx"
},
{
"title": "Supplementary Table 7. Length-based allelic frequencies",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%207.xlsx"
},
{
"title": "Polymorphism Information Content, Power of discrimination, and Power of exclusion",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%208.xlsx"
},
{
"title": "Supplementary Table 8. Polymorphism Information Content, Power of discrimination, and Power of exclusion",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%208.xlsx"
},
{
"title": "Match probability and Typical Paternity Index",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%209.xlsx"
},
{
"title": "Supplementary Table 9. Match probability and Typical Paternity Index",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2867/Supplementary%20Table%209.xlsx"
}
]
|
| identifier | ark:/88434/mds2-2867 |
| issued | 2023-04-12 |
| keyword |
[
"Autosomal STR loci",
"Lebanese population",
"Lebanon",
"Next Generation Sequencing",
"Population STRUCTURE",
"PowerSeq 46GY",
"Sequence variations"
]
|
| landingPage | https://data.nist.gov/od/id/mds2-2867 |
| language |
[
"en"
]
|
| license | https://www.nist.gov/open/license |
| modified | 2023-04-10 00:00:00 |
| programCode |
[
"006:045"
]
|
| publisher |
{
"name": "National Institute of Standards and Technology",
"@type": "org:Organization"
}
|
| references |
[
"https://doi.org/10.1016/j.fsigen.2023.102872"
]
|
| theme |
[
"Forensics:DNA and biological evidence"
]
|
| title | Sequence-based allelic variations and frequencies for 22 autosomal STR loci in the Lebanese population - Supplementary material |
