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SEQUENCING AND DE NOVO DRAFT ASSEMBLIES OF A FATHEAD MINNOW (Pimpehales promelas) reference genome
The dataset provides the URLs for accessing the genome sequence data and two draft assemblies as well as fathead minnow genotyping data associated with estimating the heterozygosity of the in-bred line.
This dataset is associated with the following publication:
Burns, F., L. Cogburn, G. Ankley , D. Villeneuve , E. Waits , Y. Chang, V. Llaca, S. Deschamps, R. Jackson, and R. Hoke. Sequencing and De novo Draft Assemblies of the Fathead Minnow (Pimphales promelas)Reference Genome. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 35(1): 212-217, (2016).
Resources
4 resources available
-
https://www.ncbi.nlm.nih.gov/assembly/GCA_000700965.1/
FILE -
https://www.ncbi.nlm.nih.gov/assembly?LinkName=nuccore_assembly&from_uid=650319607
FILE -
https://www.ncbi.nlm.nih.gov/nuccore/JNCD00000000
FILE -
FHM Diversity Data.xlsx
APPLICATION/VND.OPENXMLFORMATS-OFFICEDOCUMENT.SPREADSHEETML.SHEET
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"020:00"
]
|
| contactPoint |
{
"fn": "Daniel Villeneuve",
"hasEmail": "mailto:villeneuve.dan@epa.gov"
}
|
| description | The dataset provides the URLs for accessing the genome sequence data and two draft assemblies as well as fathead minnow genotyping data associated with estimating the heterozygosity of the in-bred line. This dataset is associated with the following publication: Burns, F., L. Cogburn, G. Ankley , D. Villeneuve , E. Waits , Y. Chang, V. Llaca, S. Deschamps, R. Jackson, and R. Hoke. Sequencing and De novo Draft Assemblies of the Fathead Minnow (Pimphales promelas)Reference Genome. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 35(1): 212-217, (2016). |
| distribution |
[
{
"title": "https://www.ncbi.nlm.nih.gov/assembly/GCA_000700965.1/",
"accessURL": "https://www.ncbi.nlm.nih.gov/assembly/GCA_000700965.1/"
},
{
"title": "https://www.ncbi.nlm.nih.gov/assembly?LinkName=nuccore_assembly&from_uid=650319607",
"accessURL": "https://www.ncbi.nlm.nih.gov/assembly?LinkName=nuccore_assembly&from_uid=650319607"
},
{
"title": "https://www.ncbi.nlm.nih.gov/nuccore/JNCD00000000",
"accessURL": "https://www.ncbi.nlm.nih.gov/nuccore/JNCD00000000"
},
{
"title": "FHM Diversity Data.xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://pasteur.epa.gov/uploads/349/FHM%20Diversity%20Data.xlsx"
}
]
|
| identifier | A-thtw-349 |
| keyword |
[
"adverse outcome pathway",
"aquatic ecosystems",
"computational toxicology",
"genome",
"pathfinder innovation project"
]
|
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2014-06-10 |
| programCode |
[
"020:095"
]
|
| publisher |
{
"name": "U.S. EPA Office of Research and Development (ORD)",
"subOrganizationOf": {
"name": "U.S. Environmental Protection Agency",
"subOrganizationOf": {
"name": "U.S. Government"
}
}
}
|
| references |
[
"https://doi.org/10.1002/etc.3186"
]
|
| rights |
null
|
| title | SEQUENCING AND DE NOVO DRAFT ASSEMBLIES OF A FATHEAD MINNOW (Pimpehales promelas) reference genome |
