The effects of elevated temperature and acidification on the biodiversity of coral reef cryptobenthic communities that recruited Autonomous Reef Monitoring Structures placed within mesocosms at the Hawaii Institute of Marine Biology between July 2016 and June 2018
The data described here includes cytochrome oxidase I (COI) DNA metabarcoding data collected from modified Autonomous Reef Monitoring Structures deployed in mesocosms at the Hawaii Institute of Marine Biology as part of an Ocean Acidification Program funded project granted to NOAA's Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Science Division (formerly known as the Coral Reef Ecosystem Division). Treatments in this fully factorial mesocosm experiment included present-day pH and temperature (Ambient treatment), ocean acidification (-0.2 pH units - Acidified treatment), ocean warming (+2°C - Heated treatment), and future ocean combined stressors (-0.2 pH units and +2 °C - Acidified-Heated treatment). ARMS were placed in replicated mesocosms for each treatment on July 2016 and removed June 2018. Upon removal, the ARMS units were individually scraped clean, contents homogenized, and 10 grams were subsampled from each unit for COI DNA metabarcoding.
Resources
4 resources available
-
Illumina Sequences
PLACEHOLDER/VALUE -
NOAA Data Management Plan (DMP)
PLACEHOLDER/VALUE -
GCMD Keyword Forum Page
PLACEHOLDER/VALUE -
Full Metadata Record
PLACEHOLDER/VALUE
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | non-public |
| contactPoint |
{
"fn": "Timmers, Molly A",
"@type": "vcard:Contact",
"hasEmail": "mailto:molly.timmers@noaa.gov"
}
|
| describedBy | https://www.ncbi.nlm.nih.gov/sra/ |
| describedByType | application/octet-steam |
| description | The data described here includes cytochrome oxidase I (COI) DNA metabarcoding data collected from modified Autonomous Reef Monitoring Structures deployed in mesocosms at the Hawaii Institute of Marine Biology as part of an Ocean Acidification Program funded project granted to NOAA's Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Science Division (formerly known as the Coral Reef Ecosystem Division). Treatments in this fully factorial mesocosm experiment included present-day pH and temperature (Ambient treatment), ocean acidification (-0.2 pH units - Acidified treatment), ocean warming (+2°C - Heated treatment), and future ocean combined stressors (-0.2 pH units and +2 °C - Acidified-Heated treatment). ARMS were placed in replicated mesocosms for each treatment on July 2016 and removed June 2018. Upon removal, the ARMS units were individually scraped clean, contents homogenized, and 10 grams were subsampled from each unit for COI DNA metabarcoding. |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Illumina Sequences",
"mediaType": "placeholder/value",
"description": "Raw illumina sequences are available in NCBI SRA (Sequence Read Archive, Accession: SRS7105074‐SRS7105095. These accession numbers represent 22 samples and includes the forward and reverse fastq file for each sample. Metabarcoding data was submitted to Genebank via Genome - https://geome-db.org/ which tags and records metadata associated with sequence files.",
"downloadURL": "https://www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=649058",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "NOAA Data Management Plan (DMP)",
"mediaType": "placeholder/value",
"description": "NOAA Data Management Plan for this record on InPort.",
"downloadURL": "https://www.fisheries.noaa.gov/inportserve/waf/noaa/nmfs/pifsc/dmp/pdf/61283.pdf",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "GCMD Keyword Forum Page",
"mediaType": "placeholder/value",
"description": "Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 22. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords",
"downloadURL": "https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords",
"describedByType": "application/octet-steam"
},
{
"@type": "dcat:Distribution",
"title": "Full Metadata Record",
"mediaType": "placeholder/value",
"description": "View the complete metadata record on InPort for more information about this dataset.",
"downloadURL": "https://www.fisheries.noaa.gov/inport/item/61283",
"describedByType": "application/octet-steam"
}
]
|
| identifier | gov.noaa.nmfs.inport:61283 |
| issued | 2020-12-10T00:00:00.000+00:00 |
| keyword |
[
"DNA/RNA Sequencing",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Autonomous Reef Monitoring Structure (ARMS)",
"EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Molecular Genetic Analysis > DNA/RNA Sequencing",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs",
"EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > BioDiversity",
"EARTH SCIENCE > Oceans > Marine Biology > Crytobiota",
"EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Biodiversity",
"Biodiversity",
"laboratory analyses",
"CORAL REEF STUDIES",
"US DOC; NOAA; Office of Oceanic and Atmospheric Research; Ocean Acidification Program",
"US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division",
"COUNTRY/TERRITORY > United States of America > Hawaii > Honolulu > Coconut Island ( Moku o loe ) (21N157W0005)",
"Coastal Waters of Hawaii",
"ARMS",
"CRED",
"CREP",
"Coral Reef Ecosystem Division",
"Coral Reef Ecosystem Program",
"ESD",
"Ecosystem Sciences Division",
"PIFSC",
"Pacific Islands Fisheries Science Center",
"DOC/NOAA/NMFS/PIFSC > Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce",
"ARMS"
]
|
| landingPage | https://www.fisheries.noaa.gov/inport/item/61283 |
| language |
[]
|
| license | https://creativecommons.org/publicdomain/zero/1.0/ |
| modified | 2020-12-10T00:00:00.000+00:00 |
| publisher |
{
"name": "Pacific Islands Fisheries Science Center",
"@type": "org:Organization"
}
|
| references |
[
"https://www.fisheries.noaa.gov/inportserve/waf/noaa/nmfs/pifsc/dmp/pdf/61283.pdf"
]
|
| rights | otherRestrictions, unclassified |
| spatial | -155.05861111111,19.72944444444,-155.06861111111,19.73944444444 |
| temporal | 2016-07-06T00:00:00+00:00/2018-06-14T00:00:00+00:00 |
| title | The effects of elevated temperature and acidification on the biodiversity of coral reef cryptobenthic communities that recruited Autonomous Reef Monitoring Structures placed within mesocosms at the Hawaii Institute of Marine Biology between July 2016 and June 2018 |
