Whole genome sequencing of three North American large-bodied birds
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein.
The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different types of sequencing performed to generate the assemblies and annotate their gene features.
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"010:12"
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|
| contactPoint |
{
"fn": "Robert S. Cornman",
"@type": "vcard:Contact",
"hasEmail": "mailto:fortdatamanagement@usgs.gov"
}
|
| description | The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different types of sequencing performed to generate the assemblies and annotate their gene features. |
| distribution |
[
{
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"title": "Digital Data",
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"accessURL": "https://doi.org/10.5066/P9DK14PM",
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"title": "Original Metadata",
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"downloadURL": "https://data.usgs.gov/datacatalog/metadata/USGS.651b47b9d34e44db0e2cd460.xml"
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|
| identifier | http://datainventory.doi.gov/id/dataset/USGS_651b47b9d34e44db0e2cd460 |
| keyword |
[
"USGS:651b47b9d34e44db0e2cd460",
"biota",
"genetic diversity",
"genetics",
"ornithology"
]
|
| modified | 2025-08-26T00:00:00Z |
| publisher |
{
"name": "U.S. Geological Survey",
"@type": "org:Organization"
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|
| spatial | -168.7500, 24.8466, -52.0312, 70.8447 |
| theme |
[
"Geospatial"
]
|
| title | Whole genome sequencing of three North American large-bodied birds |
