Found 21 datasets matching "variant sequencing".
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The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files,...
Search relevance: 123.34 | Views last month: 1 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) include an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six...
Search relevance: 120.81 | Views last month: 0 -
The Human Pangenome Reference Consortium (HPRC) tested which combination of current genome sequencing and automated assembly approaches yields the most complete, accurate, and cost-effective...
Search relevance: 114.73 | Views last month: 1 -
This data table contains the processed data for the LacI genotype-phenotype landscape, a quantitative measurement of the phenotype for approximately 60,000 variants of the E. coli LacI protein....
Search relevance: 64.71 | Views last month: 0 -
Data from S&T Project 7134. Soil and water samples from constructed wetlands at an advanced water treatment facility in Oxnard, CA were analyzed by 16S rRNA gene sequencing to characterize...
Search relevance: 64.21 | Views last month: 0 -
The data set includes the sample metadata, quantitative data of measurements of SARS-CoV-2 gene fragments in wastewater and variant presence interpreted from sequence data. This dataset is...
Search relevance: 53.07 | Views last month: 0 -
Background Mutations in the CHK2 gene at chromosome 22q12.1 have been reported in families with Li-Fraumeni syndrome. Chk2 is an effector kinase that is activated in response to DNA...
Search relevance: 51.07 | Views last month: 1 -
The ribosomal RNA (rRNA) internal transcribed spacer (ITS) regions are commonly used to identify fungi and other eukaryotic taxa in amplicon sequencing. The highly conserved rRNA regions flanking...
Search relevance: 49.44 | Views last month: 1 -
__Note:__ This dataset is no longer being updated due to the end of the COVID-19 Public Health Emergency. The California Department of Public Health (CDPH) is identifying the prevalence of...
Search relevance: 48.33 | Views last month: 0 -
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata). Experiments conducted in Hilo, HI,...
Search relevance: 47.15 | Views last month: 1 -
Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex sequencing. Insect gut...
Search relevance: 45.34 | Views last month: 3 -
We documented the type two polyketide synthases(PKS II) gene diversity and novelty by sequencing KSα genes known to synthesize bioactive small molecules. Sequences were derived from culturable...
Search relevance: 43.12 | Views last month: 0 -
The files in this data release (Kellogg and others, 2022) are those referenced in the journal article by Evans and others (2022) entitled “Biofilms as Potential Reservoirs of Stony Coral Tissue...
Search relevance: 42.89 | Views last month: 0 -
The Asian giant hornet, Vespa mandarinia, has a native range that extends from northern India to East Asia. In 2019, the hornet was confirmed for the first time in North America, posing an...
Search relevance: 39.08 | Views last month: 2 -
Summary: Genome-wide polymorphisms called from publicly-available switchgrass genotype data. These variants are used in a publication under review, Harnessing citizen science to contextualize...
Search relevance: 37.43 | Views last month: 0 -
A controlled influenza A virus transmission experiment was conducted in biosafety level 2 containment from January 23, 2018- February 13, 2018 assessing the respiratory droplet transmission...
Search relevance: 36.42 | Views last month: 0 -
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
Search relevance: 36.33 | Views last month: 0 -
The files in this data release (Kellogg and others, 2023) are those referenced in the journal article by Evans and others (2023) entitled “Investigating microbial size classes associated with the...
Search relevance: 29.03 | Views last month: 0
