Data from: "Genome report - chromosome-scale genome assembly of the Olive fly Bactrocera oleae (Diptera-Tephritidae)"

The olive fruit fly, Bactrocera oleae (Rossi) (Diptera: Tephritidae), is a specialist of fruits of the genus Olea and is a major pest of commercial olives due to their adverse impacts to olive production. In support of genomic and physiological research of the olive fly, we sequenced, assembled, and annotated two independent genomes, one from a wild-collected male and one from a wild-collected female. The resulting genomes are highly contiguous, collinear, and complete, attesting to the accuracy and quality of both assemblies. In addition to the autosomes captured as single contigs, the X and Y chromosomes were also captured as evidenced by the X chromosome showing diploid coverage in the female assembly compared to haploid coverage in the male assembly and the Y chromosome being entirely absent from the female assembly. In addition, a complete genome assembly of a known obligate symbiont to the olive fly, Candidatus Erwinia dacicola (Ca. E. dacicola), was fully captured.Dataset includes scripts used in the assembly of the Bactrocera oleae genomes and the obligate symbiont Candidatus Erwinia dacicola genome. It can be used to replicate the steps necessary to assemble the male and female genomes described in National Center for Biotechnology Information (NCBI) BioProject: PRJNA1089778 and PRJNA1275571, male and female, respectively. It can also be used to replicate the steps to assemble the symbiont genome described in National Center for Biotechnology Information (NCBI) BioProject: PRJNA1090968. The olive fruit fly genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda. The Ca. E. dacicola genome assembly workflow was performed on the United States Department of Agriculture (USDA) – SCINet (HPC) Ceres and installed via Conda.

                                            [
  "005:18"
]
                                        

                                            {
  "fn": "Mason, Charles J.",
  "hasEmail": "mailto:charles.mason@usda.gov"
}
                                        

                                            [
  {
    "@type": "dcat:Distribution",
    "title": "Bactrocera_oleae_genome_assembly_scripts.zip",
    "format": "zip",
    "mediaType": "application/zip",
    "downloadURL": "https://ndownloader.figshare.com/files/57018980"
  }
]
                                        

                                            [
  "Diptera",
  "Tephritidae",
  "chromosome",
  "fruit fly",
  "genome assembly",
  "genomics",
  "insect",
  "pest",
  "source code",
  "symbiosis"
]
                                        

                                            [
  "005:040"
]
                                        

                                            {
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}