Return to search results
Data From: Two haplotype-resolved genomes reveal important flower traits in bigleaf hydrangea (Hydrangea macrophylla) and insights into Asterid evolution
These files represent the final annotations for two hydrangea genomes derived from BRAKER2 using total RNAs extracted from seven tissue types, including sepals, buds, flowers, nodes, internodes, leaves, and roots, and subjected to library preparation according to the manufacturer’s instructions. The publicly available Iso-seq reads on NCBI (PRJDB9979) were used for genome annotation. Files include normal gff3 format and coding sequence (CDS) files.
Resources
6 resources available
-
Veithcii.gff3
GFF3 -
Bailey.gff3
GFF3 -
Veitchii_cds.fasta
FASTA -
Bailey_cds.fasta
FASTA -
Veitchii_primary_order.fasta
FASTA -
Bailey_primary_order.fasta
FASTA
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[
"005:18"
]
|
| contactPoint |
{
"fn": "Hulse-Kemp, Amanda M.",
"hasEmail": "mailto:amanda.hulse-kemp@usda.gov"
}
|
| description | <p dir="ltr">These files represent the final annotations for two hydrangea genomes derived from BRAKER2 using total RNAs extracted from seven tissue types, including sepals, buds, flowers, nodes, internodes, leaves, and roots, and subjected to library preparation according to the manufacturer’s instructions. The publicly available Iso-seq reads on NCBI (PRJDB9979) were used for genome annotation. Files include normal gff3 format and coding sequence (CDS) files.</p> |
| distribution |
[
{
"@type": "dcat:Distribution",
"title": "Veithcii.gff3",
"format": "gff3",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/45117892"
},
{
"@type": "dcat:Distribution",
"title": "Bailey.gff3",
"format": "gff3",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/45117895"
},
{
"@type": "dcat:Distribution",
"title": "Veitchii_cds.fasta",
"format": "fasta",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/45117898"
},
{
"@type": "dcat:Distribution",
"title": "Bailey_cds.fasta",
"format": "fasta",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/45117901"
},
{
"@type": "dcat:Distribution",
"title": "Veitchii_primary_order.fasta",
"format": "fasta",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/45117949"
},
{
"@type": "dcat:Distribution",
"title": "Bailey_primary_order.fasta",
"format": "fasta",
"mediaType": "text/plain",
"downloadURL": "https://ndownloader.figshare.com/files/45117952"
}
]
|
| identifier | 10.15482/USDA.ADC/25054979.v1 |
| keyword |
[
"flowers",
"gene annotation",
"horticulture production",
"hydrangea"
]
|
| license | https://creativecommons.org/licenses/by/4.0/ |
| modified | 2025-05-06 |
| programCode |
[
"005:040"
]
|
| publisher |
{
"name": "Agricultural Research Service",
"@type": "org:Organization"
}
|
| temporal | 2023-11-09/2023-11-09 |
| title | Data From: Two haplotype-resolved genomes reveal important flower traits in bigleaf hydrangea (Hydrangea macrophylla) and insights into Asterid evolution |
