Drinking Water Microbiome Taxonomic Lineage Abundance Data Set
An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a ratio of all sequences obtained for each individual sample.
This dataset is associated with the following publication:
Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020).
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"020:00"
]
|
| contactPoint |
{
"fn": "Vicente Gomez-Alvarez",
"hasEmail": "mailto:gomez-alvarez.vicente@epa.gov"
}
|
| description | An abundance matrix (BM_taxonomic_lineage.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a ratio of all sequences obtained for each individual sample. This dataset is associated with the following publication: Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020). |
| distribution |
[
{
"title": "BM_taxonomic_lineage.xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1369389/BM_taxonomic_lineage.xlsx"
}
]
|
| identifier | https://doi.org/10.23719/1369389 |
| keyword |
[
"16S rRNA",
"drinking water",
"machine learning",
"microbiome",
"nitrification",
"relative abundance",
"taxonomy"
]
|
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2017-07-06 |
| programCode |
[
"020:096"
]
|
| publisher |
{
"name": "U.S. EPA Office of Research and Development (ORD)",
"subOrganizationOf": {
"name": "U.S. Environmental Protection Agency",
"subOrganizationOf": {
"name": "U.S. Government"
}
}
}
|
| references |
[
"https://doi.org/10.3389/fmicb.2020.571009"
]
|
| rights |
null
|
| title | Drinking Water Microbiome Taxonomic Lineage Abundance Data Set |
