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Functional annotation for 15 diverse arthropod genomes

Published by Agricultural Research Service | Department of Agriculture | Metadata Last Checked: January 27, 2026 | Last Modified: 2025-11-22
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species. You can find more information about the pipeline at our readthedocs site. The files for each genome include GOanna, InterproScan and KOBAS predictions. Arthropod genomes selected for this study and their assembly and annotation statistics. Apis Mellifera (honey bee) Drosophila melanogaster (fruit fly) Tribolium castaneum (red flour beetle) Latrodectus hesperus (Western black widow spider) Limnephilus lunatus (caddisfly) Oncopeltus fasciatus (Large milkweed bug) Homalodisca vitripennis (Glassy-winged sharpshooter) Eurytemora affinis (calanoid copepod) Agrilus planipennis (emerald ash borer) Copidosoma floridanum (parasitoid wasp) Athalia rosae (turnip sawfly) Ceratitis capitata (Mediterranean fruit fly) Cimex lectularius (Cimicidae bed bug) Varroa destructor(parasitic mite) Diaphorina citri (Asian citrus psyllid) Resources in this dataset:Resource Title: Cimex lectularius (Cimicidae bed bug) annotation. File Name: CLEC.tar.gzResource Description: Functional annotation for Clec-OGSv1.2 protein setResource Title: Tribolium castaneum (red flour beetle) annotation. File Name: TCAS.tar.gzResource Description: Functional annotation for TCAS_OGS_v3 protein setResource Title: Drosophila melanogaster (fruit fly) annotation. File Name: DMEL.tar.gzResource Description: Functional annotation for DMEL_r6.38 protein set Resource Title: Varroa destructor (parasitic mite) annotation. File Name: VDES.tar.gzResource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1) Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation. File Name: ONCFAS.tar.gzResource Description: Functional annotation for oncfas_OGSv1.2 protein setResource Title: Apis Mellifera (honey bee) annotation. File Name: AMEL.tar.gzResource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1) Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation. File Name: HVIT.tar.gzResource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1) Resource Title: Limnephilus lunatus (caddisfly) annotation. File Name: LLUN.tar.gzResource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1) Resource Title: Latrodectus hesperus (Western black widow spider) annotation. File Name: LHES.tar.gzResource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1) Resource Title: Eurytemora affinis (calanoid copepod) annotation. File Name: EAFF.tar.gzResource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1) Resource Title: Copidosoma floridanum (parasitoid wasp) annotation. File Name: CFLO.tar.gzResource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1) Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation. File Name: CCAP.tar.gzResource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2) Resource Title: Athalia rosae (turnip sawfly) annotation. File Name: AROS.tar.gzResource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)Resource Title: Agrilus planipennis (emerald ash borer) annotation. File Name: APLA.tar.gzResource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)

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Complete Metadata
@type dcat:Dataset
accessLevel public
bureauCode 
                                            [
  "005:18"
]
contactPoint 
                                            {
  "fn": "Saha, Surya",
  "hasEmail": "mailto:ss2489@cornell.edu"
}
description <p>We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species. You can find more information about the pipeline at our <a href="https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html">readthedocs </a> site. The files for each genome include GOanna, InterproScan and KOBAS predictions. </p> <p><i><strong> Arthropod genomes selected for this study and their assembly and annotation statistics.</strong></i> </p> <ol> <li><i>Apis Mellifera</i> (honey bee)</li> <li><i>Drosophila melanogaster</i> (fruit fly)</li> <li><i>Tribolium castaneum</i> (red flour beetle)</li> <li><i>Latrodectus hesperus</i> (Western black widow spider)</li> <li><i>Limnephilus lunatus</i> (caddisfly)</li> <li><i>Oncopeltus fasciatus</i> (Large milkweed bug)</li> <li><i>Homalodisca vitripennis</i> (Glassy-winged sharpshooter)</li> <li><i>Eurytemora affinis</i> (calanoid copepod)</li> <li><i>Agrilus planipennis</i> (emerald ash borer)</li> <li><i>Copidosoma floridanum</i> (parasitoid wasp)</li> <li><i>Athalia rosae</i> (turnip sawfly)</li> <li><i>Ceratitis capitata</i> (Mediterranean fruit fly)</li> <li><i>Cimex lectularius</i> (Cimicidae bed bug)</li> <li><i>Varroa destructor</i>(parasitic mite)</li> <li> <p><i>Diaphorina citri</i> (Asian citrus psyllid)</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Cimex lectularius (Cimicidae bed bug) annotation.</p> <p>File Name: CLEC.tar.gz</p><p>Resource Description: Functional annotation for Clec-OGSv1.2 protein set</p></li><br><li><p>Resource Title: Tribolium castaneum (red flour beetle) annotation.</p> <p>File Name: TCAS.tar.gz</p><p>Resource Description: Functional annotation for TCAS_OGS_v3 protein set</p></li><br><li><p>Resource Title: Drosophila melanogaster (fruit fly) annotation.</p> <p>File Name: DMEL.tar.gz</p><p>Resource Description: Functional annotation for DMEL_r6.38 protein set </p></li> </ul></li></ol> <p></p><br><li><p>Resource Title: Varroa destructor (parasitic mite) annotation.</p> <p>File Name: VDES.tar.gz</p><p>Resource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)</p> <p></p></li><br><li><p>Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation.</p> <p>File Name: ONCFAS.tar.gz</p><p>Resource Description: Functional annotation for oncfas_OGSv1.2 protein set</p></li><br><li><p>Resource Title: Apis Mellifera (honey bee) annotation.</p> <p>File Name: AMEL.tar.gz</p><p>Resource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)</p> <p></p></li><br><li><p>Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation.</p> <p>File Name: HVIT.tar.gz</p><p>Resource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1) </p></li><br><li><p>Resource Title: Limnephilus lunatus (caddisfly) annotation.</p> <p>File Name: LLUN.tar.gz</p><p>Resource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)</p> <p></p></li><br><li><p>Resource Title: Latrodectus hesperus (Western black widow spider) annotation.</p> <p>File Name: LHES.tar.gz</p><p>Resource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)</p> <p></p></li><br><li><p>Resource Title: Eurytemora affinis (calanoid copepod) annotation.</p> <p>File Name: EAFF.tar.gz</p><p>Resource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1) </p></li><br><li><p>Resource Title: Copidosoma floridanum (parasitoid wasp) annotation.</p> <p>File Name: CFLO.tar.gz</p><p>Resource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1) </p></li><br><li><p>Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation.</p> <p>File Name: CCAP.tar.gz</p><p>Resource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)</p> <p></p></li><br><li><p>Resource Title: Athalia rosae (turnip sawfly) annotation.</p> <p>File Name: AROS.tar.gz</p><p>Resource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)</p></li><br><li><p>Resource Title: Agrilus planipennis (emerald ash borer) annotation.</p> <p>File Name: APLA.tar.gz</p><p>Resource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)</p></li><p></p>
distribution 
                                            [
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    "title": "CLEC.tar_0.gz",
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    "title": "DMEL.tar.gz",
    "format": "gz",
    "mediaType": "application/x-gzip",
    "downloadURL": "https://ndownloader.figshare.com/files/43369689"
  },
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    "@type": "dcat:Distribution",
    "title": "VDES.tar.gz",
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    "downloadURL": "https://ndownloader.figshare.com/files/43369692"
  },
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    "title": "ONCFAS.tar.gz",
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    "downloadURL": "https://ndownloader.figshare.com/files/43369695"
  },
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    "title": "AMEL.tar.gz",
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    "mediaType": "application/x-gzip",
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  },
  {
    "@type": "dcat:Distribution",
    "title": "HVIT.tar.gz",
    "format": "gz",
    "mediaType": "application/x-gzip",
    "downloadURL": "https://ndownloader.figshare.com/files/43369701"
  },
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    "@type": "dcat:Distribution",
    "title": "LLUN.tar.gz",
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    "title": "LHES.tar.gz",
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    "mediaType": "application/x-gzip",
    "downloadURL": "https://ndownloader.figshare.com/files/43369716"
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    "title": "EAFF.tar.gz",
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    "@type": "dcat:Distribution",
    "title": "CFLO.tar.gz",
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    "title": "CCAP.tar.gz",
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    "@type": "dcat:Distribution",
    "title": "AROS.tar.gz",
    "format": "gz",
    "mediaType": "application/x-gzip",
    "downloadURL": "https://ndownloader.figshare.com/files/43369740"
  },
  {
    "@type": "dcat:Distribution",
    "title": "APLA.tar.gz",
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    "downloadURL": "https://ndownloader.figshare.com/files/43369746"
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]
identifier 10.15482/USDA.ADC/1522860
keyword 
                                            [
  "ARS",
  "Gene ontology",
  "Pathways",
  "data.gov",
  "functional annotation",
  "gene annotation"
]
license https://creativecommons.org/publicdomain/zero/1.0/
modified 2025-11-22
programCode 
                                            [
  "005:040"
]
publisher 
                                            {
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}
spatial 
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temporal 2021-07-06/2021-07-06
title Functional annotation for 15 diverse arthropod genomes

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