High-throughput sequencing taxonomic identification and morphology-based taxonomic identification raw data
The files include the presence/absence data by sample for either high-throughput sequencing-based taxonomy or morphology-based taxonomy. The files also include our estimates of the species' biomass in each sample, along with the presence/absence classification by taxonomic method.
This dataset is associated with the following publication:
Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, and J. Martinson. Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. NRC Research Press, Ottawa, CANADA, 78(6): 752-764, (2021).
Complete Metadata
| accessLevel | public |
|---|---|
| bureauCode |
[
"020:00"
]
|
| contactPoint |
{
"fn": "Joel Hoffman",
"hasEmail": "mailto:hoffman.joel@epa.gov"
}
|
| description | The files include the presence/absence data by sample for either high-throughput sequencing-based taxonomy or morphology-based taxonomy. The files also include our estimates of the species' biomass in each sample, along with the presence/absence classification by taxonomic method. This dataset is associated with the following publication: Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, and J. Martinson. Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. NRC Research Press, Ottawa, CANADA, 78(6): 752-764, (2021). |
| distribution |
[
{
"title": "https://cdnsciencepub.com/doi/abs/10.1139/cjfas-2020-0224",
"accessURL": "https://cdnsciencepub.com/doi/abs/10.1139/cjfas-2020-0224"
},
{
"title": "Fish_biomass_data_1_20_20.xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1520945/Fish_biomass_data_1_20_20.xlsx"
},
{
"title": "MorphID.xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1520945/MorphID.xlsx"
},
{
"title": "OTUclusterTables_bothPrimers.xlsx",
"mediaType": "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
"downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1520945/OTUclusterTables_bothPrimers.xlsx"
}
]
|
| identifier | https://doi.org/10.23719/1520945 |
| keyword |
[
"DNA metabarcoding",
"ichthyoplankton",
"invasive species",
"monitoring",
"taxonomy"
]
|
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2020-12-08 |
| programCode |
[
"020:096"
]
|
| publisher |
{
"name": "U.S. EPA Office of Research and Development (ORD)",
"subOrganizationOf": {
"name": "U.S. Environmental Protection Agency",
"subOrganizationOf": {
"name": "U.S. Government"
}
}
}
|
| references |
[
"https://doi.org/10.1139/cjfas-2020-0224"
]
|
| rights |
null
|
| title | High-throughput sequencing taxonomic identification and morphology-based taxonomic identification raw data |
