Return to search results
RGTM 10169
NIST developed a reference material consisting of synthetic fragments of the SARS-CoV-2 virus RNA, which is the target of molecular diagnostic tests. These RNA fragments can assist in the development and validation of RT-qPCR assays for the detection SARS-CoV-2. The RNA fragments are characterized for concentration using digital PCR methods, may be used to assess limits of detection for SARS-CoV-2 assays, and may calibrate other in-house or commercial SARS-CoV-2 controls. This dataset includes data used for RTGM 10169 SARs-Cov-2 Research Grade Test Material validation. The Illumina and ONT sequence data were used to verify the construct sequence.
Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| accrualPeriodicity | irregular |
| bureauCode |
[
"006:55"
]
|
| contactPoint |
{
"fn": "Megan Cleveland",
"hasEmail": "mailto:megan.cleveland@nist.gov"
}
|
| description | NIST developed a reference material consisting of synthetic fragments of the SARS-CoV-2 virus RNA, which is the target of molecular diagnostic tests. These RNA fragments can assist in the development and validation of RT-qPCR assays for the detection SARS-CoV-2. The RNA fragments are characterized for concentration using digital PCR methods, may be used to assess limits of detection for SARS-CoV-2 assays, and may calibrate other in-house or commercial SARS-CoV-2 controls. This dataset includes data used for RTGM 10169 SARs-Cov-2 Research Grade Test Material validation. The Illumina and ONT sequence data were used to verify the construct sequence. |
| distribution |
[
{
"title": "Research Grade Test Material (RGTM) 10169",
"accessURL": "https://github.com/usnistgov/RGTM10169",
"description": "information related to Research Grade Test Material (RGTM) 10169"
},
{
"title": "ont_pycoqc.html",
"mediaType": "application/x-zip-compressed",
"description": "This file contains the ont_pycoqc.html file",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2714/ont%20pycoqc%20html.zip"
},
{
"title": "multiqc.html",
"mediaType": "application/x-zip-compressed",
"description": "This zip file contains multiqc.html",
"downloadURL": "https://data.nist.gov/od/ds/mds2-2714/multiqc%20html.zip"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/README.md"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/README.md.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c1.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c1.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c2.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ill_c2.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ont.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/bam/ont.txt.sha256"
},
{
"mediaType": "application/zip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R1_fastqc.zip"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R1_fastqc.zip.sha256"
},
{
"mediaType": "application/zip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R2_fastqc.zip"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c1_R2_fastqc.zip.sha256"
},
{
"mediaType": "application/zip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R1_fastqc.zip"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R1_fastqc.zip.sha256"
},
{
"mediaType": "application/zip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R2_fastqc.zip"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/fq/ill_c2_R2_fastqc.zip.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc.log"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc.log.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_citations.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_citations.txt.sha256"
},
{
"mediaType": "application/json",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_data.json"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_data.json.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_fastqc.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_fastqc.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_general_stats.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_general_stats.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_samtools_stats.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_samtools_stats.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_sources.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/analyses/qc/multiqc_data/multiqc_sources.txt.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R1_001.fastq.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R1_001.fastq.gz.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R2_001.fastq.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c1_R2_001.fastq.gz.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R1_001.fastq.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R1_001.fastq.gz.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R2_001.fastq.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/c2_R2_001.fastq.gz.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam.bai"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam.bai.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill.bam.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz.tbi"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c1.vcf.gz.tbi.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz.tbi"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_c2.vcf.gz.tbi.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_depth.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/ill_depth.txt.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5.chk"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5.chk.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5sum_list.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ill/md5sum_list.txt.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/fast5s.tar.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/fast5s.tar.gz.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam.bai"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam.bai.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.bam.sha256"
},
{
"mediaType": "application/gzip",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.fastq.gz"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont.fastq.gz.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_depth.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_depth.txt.sha256"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_guppy_sequencing_summary.txt"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ont/ont_guppy_sequencing_summary.txt.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/annotations.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/annotations.bed.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct1_w_flankings.fa"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct1_w_flankings.fa.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct2_w_flankings.fa"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/construct2_w_flankings.fa.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/constructs_w_flankings.fa"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/constructs_w_flankings.fa.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/primers.bed"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/primers.bed.sha256"
},
{
"mediaType": "application/octet-stream",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/sars-cov-2-RGTM.genome"
},
{
"mediaType": "text/plain",
"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2714/ref/sars-cov-2-RGTM.genome.sha256"
}
]
|
| identifier | ark:/88434/mds2-2714 |
| issued | 2023-02-09 |
| keyword |
[
"Biosciences and Health",
"DNA",
"PCR",
"SRM",
"digital PCR",
"reference material",
"sequencing",
"virus"
]
|
| landingPage | https://data.nist.gov/od/id/mds2-2714 |
| language |
[
"en"
]
|
| license | https://www.nist.gov/open/license |
| modified | 2022-07-15 00:00:00 |
| programCode |
[
"006:045"
]
|
| publisher |
{
"name": "National Institute of Standards and Technology",
"@type": "org:Organization"
}
|
| theme |
[
"Bioscience:Genomic measurements"
]
|
| title | RGTM 10169 |