Found 651 datasets matching "sequencing".
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Background Better automation, lower cost per reaction and a heightened interest in comparative genomics has led to a dramatic increase in DNA sequencing activities. Although the large...
Search relevance: 110.74 | Views last month: 0 -
This repository provides analysis code and results produced during evaluation of metagenomic sequencing (MGS) data collected through the Mosaic Standards Challenge. The Mosaic Standards Challenge...
Search relevance: 105.98 | Views last month: 2 -
Shiga toxin-producing Escherichia coli (STEC) and Listeria monocytogenes are responsible for severe foodborne illnesses in the United States. Current identification methods require at least four...
Search relevance: 104.65 | Views last month: 0 -
Gene expression data on >20 year-old, paired frozen and archival FFPE liver samples generated using targeted resequencing (TempO-Seq) and whole-genome RNA-sequencing methods. Samples were...
Search relevance: 103.73 | Views last month: 0 -
Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating from immersed Micronized Copper...
Search relevance: 99.79 | Views last month: 0 -
A requirement of any foodborne pathogen testing method is that it only detects live bacteria. Ethidium monoazide (EMA) and propidium monoazide (PMA) are dyes that penetrate the membranes of dead...
Search relevance: 98.92 | Views last month: 0 -
High-throughput sequencing (HTS) of reduced representation genomic libraries has ushered in an era of genotyping-by-sequencing (GBS), where genome-wide genotype data can be obtained for nearly any...
Search relevance: 93.99 | Views last month: 4 -
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening complications. The current...
Search relevance: 93.47 | Views last month: 0 -
This dataset contains the invertebrates (identified to Order and Family) present in Cactus Wren nestling fecal samples and found using DNA sequencing (metabarcoding) methods. Nestling fecal...
Search relevance: 93.46 | Views last month: 1 -
This study presents the isolation of exosomes and RNA from 20 samples of white-tailed deer serum using a commercially available kit, incorporating optimizations for RNA yield through two elutions...
Search relevance: 92.50 | Views last month: 0 -
NCBI BioProject Description: Houses the amplicon sequencing data (16S and ITS) used in the study. BioProject ID: PRJNA1114128 Link: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1114128
Search relevance: 91.32 | Views last month: 1 -
The ribosomal RNA (rRNA) internal transcribed spacer (ITS) regions are commonly used to identify fungi and other eukaryotic taxa in amplicon sequencing. The highly conserved rRNA regions flanking...
Search relevance: 91.13 | Views last month: 1 -
These data are bacterial 16S rRNA sequences and a taxonomic summary table for biofilm samples from the bio-reactors. The data may provide background/supporting information for other researchers...
Search relevance: 90.15 | Views last month: 0 -
Aedes aegypti is the primary vector of several viruses of international public health concern, including Zika, dengue, yellow fever, and chikungunya. Their synanthropic ecology and establishment...
Search relevance: 89.90 | Views last month: 0 -
Raw sequencing data as generated by the five different methods used are provided for each of the three samples used in the comparison. The files are in FASTQ format as exported from the Oxford...
Search relevance: 89.62 | Views last month: 0 -
Dataset including all data for samples analyzed in Darling et al. 2018 Environmental Science & Technology. Includes OTU counts for all samples, taxonomic assignments for all OTUs, variables...
Search relevance: 85.23 | Views last month: 0 -
Data were collected in August and September 2015 for analysis of bacteria communities of the Grand Calumet River and associated shorelines. Water samples were collected on three occasions...
Search relevance: 84.79 | Views last month: 0 -
This study generated genetic 'barcode' data using high-throughput sequencing to characterize pollen collected by the endangered rusty-patched bumblebee, Bombus affinis. Pollen samples were...
Search relevance: 81.74 | Views last month: 0 -
This study produced reference quality genomes of two cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus, which can be used to identify drug targets with acaricidal activity and...
Search relevance: 81.44 | Views last month: 0 -
FASTA files containing the sequence data and for Assembled contigs (FastA), Predicted genes (FastA), Predicted proteins (FastA), Gene prediction (GFF v2). This dataset is not publicly accessible...
Search relevance: 79.81 | Views last month: 0
