Catalog - Data.gov

Found 11 datasets matching "nanopore".

Federal
Resequencing of select microbial isolates from the International Space Station with the Nanopore MinION
- Organization: National Aeronautics and Space Administration
- Updated: 2025-08-21
Microbial isolates from the NASA Space Biology-funded microbial tracking experiments were re-sequenced using the Oxford Nanopore MinION.
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Search relevance: 106.16 | Views last month: 0
Federal
PPdiffuse: Web-based (html and javascript) calculator for voltage-driven transport of polypeptides in nanopores
- Organization: National Institute of Standards and Technology
- Updated: 2020-01-30 00:00:00
Web calculator for polypeptide motion through nanopores. The calculation is done in the framework of conditional first passage times based on the Smoluchowski transport equation. These...
- html
- none
Search relevance: 79.60 | Views last month: 0
Federal
Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology”
- Organization: Department of the Interior
- Updated: 2023-02-17T00:00:00Z
Raw sequencing data as generated by the five different methods used are provided for each of the three samples used in the comparison. The files are in FASTQ format as exported from the Oxford...
- xml
- xml
Search relevance: 75.89 | Views last month: 0
Federal
Data from: Host usage in Aedes aegypti collected from Houston, Texas and Phoenix, Arizona using whole mosquito third-generation sequencing blood meal analysis
- Organization: Department of Agriculture
- Updated: 2025-05-19
Aedes aegypti is the primary vector of several viruses of international public health concern, including Zika, dengue, yellow fever, and chikungunya. Their synanthropic ecology and establishment...
- zip
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- +8 more
Search relevance: 63.69 | Views last month: 0
Federal
Biomolecule Sequencer
- Organization: National Aeronautics and Space Administration
- Updated: 2025-04-01
Technology demonstration of a nanopore sequencer operating aboard the ISS in comparison with the same sequencer on the ground.
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Search relevance: 53.95 | Views last month: 0
Federal
Draft genome sequence of Klebsiella quasipneumoniae subsp. similipneumoniae strain IF3SW-P1 isolated from the International Space Station
- Organization: National Aeronautics and Space Administration
- Updated: 2025-08-21
In 2015, the Advanced Resistive Exercise Device (ARED) foot panel on the International Space Station (ISS) was sampled to identify culturable microorganisms. The whole-genome of the strain...
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Search relevance: 38.71 | Views last month: 1
Federal
precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions
- Organization: National Institute of Standards and Technology
- Updated: 2021-01-26 00:00:00
The precisionFDA Truth Challenge V2 aimed to assess the state-of-the-art of variant calling in difficult-to-map regions and the Major Histocompatibility Complex (MHC). Starting with FASTQ files,...
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- +797 more
Search relevance: 32.76 | Views last month: 1
Federal
Data from: Use of long-read sequencing simulators to assess real-world applications for food safety
- Organization: Department of Agriculture
- Updated: 2025-11-21
Shiga toxin-producing Escherichia coli (STEC) and Listeria monocytogenes are responsible for severe foodborne illnesses in the United States. Current identification methods require at least four...
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- +51 more
Search relevance: 31.31 | Views last month: 0
Federal
Long-read sequencing reveals increased occurrence of genomic variants and adenosine methylation in Bacillus pumilus SAFR-032 after long-duration flight exposure onboard the International Space Station
- Organization: National Aeronautics and Space Administration
- Updated: 2025-08-21
Bacillus pumilus SAFR-032, an endospore-forming bacterial strain, was investigated to determine its methylation pattern (methylome) change, compared to ground control, after direct exposure to...
- none
Search relevance: 29.69 | Views last month: 4
Federal
Data from: Rapid and cost-effective screening of genetic markers associated with pyrethroid resistance in Musca domestica using RNAse H2 PCR (rhPCR)
- Organization: Department of Agriculture
- Updated: 2025-05-06
Pyrethroid resistance, particularly knockdown resistance (kdr), is widespread in insect pest populations, but rarely has kdr been associated with field-level pest control failure. The prevailing...
- none
- xls
- xls
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- +13 more
Search relevance: 29.30 | Views last month: 0
Federal
Long-read sequencing data from pure cultures of Escherichia coli O157:H7 and ground beef inoculated with E. coli O157:H7
- Organization: Department of Agriculture
- Updated: 2024-03-21
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening complications. The current...
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- +224 more
Search relevance: 25.12 | Views last month: 0

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Resequencing of select microbial isolates from the International Space Station with the Nanopore MinION

PPdiffuse: Web-based (html and javascript) calculator for voltage-driven transport of polypeptides in nanopores

Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology”

Data from: Host usage in <i>Aedes aegypti</i> collected from Houston, Texas and Phoenix, Arizona using whole mosquito third-generation sequencing blood meal analysis

Biomolecule Sequencer

Draft genome sequence of Klebsiella quasipneumoniae subsp. similipneumoniae strain IF3SW-P1 isolated from the International Space Station

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

Data from: Use of long-read sequencing simulators to assess real-world applications for food safety

Long-read sequencing reveals increased occurrence of genomic variants and adenosine methylation in Bacillus pumilus SAFR-032 after long-duration flight exposure onboard the International Space Station

Data from: Rapid and cost-effective screening of genetic markers associated with pyrethroid resistance in <i>Musca domestica</i> using RNAse H2 PCR (rhPCR)

Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7