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CottonGen JBrowse

Published by Agricultural Research Service | Department of Agriculture | Metadata Last Checked: January 27, 2026 | Last Modified: 2025-11-21
CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu. Whole Genomes 2019-03: Gossypium barbadense AD2 Hai-7124 genome ZJU v1.1_a1 2018-12: Gossypium barbadense AD2 3-79 genome HAU v2_a1 2015-12: Gossypium barbadense AD2 3-79 genome HAU v1_a1 2019-03: Gossypium hirsutum AD1 genome ZJU-Improved v2.1_a1 2018-12: Gossypium hirsutum AD1 genome HAU v1_a1 2017-09: Gossypium hirsutum AD1 genome TX-JGI v1.1_a1 2015-04: Gossypium hirsutum AD1 genome NAU-NBI v1.1_a1.1 2015-04: Gossypium hirsutum AD1 genome CGP-BGI v1_a1 2018-05: Gossypium arboreum A2 genome CRI-Updated v1_a1 2014-05: Gossypium arboreum A2 genome CGP-BGI v2_a1 2012-12: Gossypium raimondii D5 genome JGI v2_a2.1 2012-08: Gossypium raimondii D5 genome CGP-BGI v1_a1 Chloroplast Genomes Gossypium arboreum chloroplast Gossypium barbadense chloroplast Gossypium hirsutum chloroplast Gossypium raimondii chloroplast Please watch the JBrowse tutorial for more details about how to navigate and use JBrowse. Resources in this dataset:Resource Title: CottonGen JBrowse and User Manual. File Name: Web Page, url: https://www.cottongen.org/node/8287911 CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu. Whole Genomes * 2019-03: Gossypium barbadense AD2 Hai-7124 genome ZJU v1.1_a1 * 2018-12: Gossypium barbadense AD2 3-79 genome HAU v2_a1 * 2015-12: Gossypium barbadense AD2 3-79 genome HAU v1_a1 * 2019-03: Gossypium hirsutum AD1 genome ZJU-Improved v2.1_a1 * 2018-12: Gossypium hirsutum AD1 genome HAU v1_a1 * 2017-09: Gossypium hirsutum AD1 genome TX-JGI v1.1_a1 * 2015-04: Gossypium hirsutum AD1 genome NAU-NBI v1.1_a1.1 * 2015-04: Gossypium hirsutum AD1 genome CGP-BGI v1_a1 * 2018-05: Gossypium arboreum A2 genome CRI-Updated v1_a1 * 2014-05: Gossypium arboreum A2 genome CGP-BGI v2_a1 * 2012-12: Gossypium raimondii D5 genome JGI v2_a2.1 * 2012-08: Gossypium raimondii D5 genome CGP-BGI v1_a1 Chloroplast Genomes * Gossypium arboreum chloroplast * Gossypium barbadense chloroplast * Gossypium hirsutum chloroplast * Gossypium raimondii chloroplast Please watch the JBrowse tutorial for more details about how to navigate and use JBrowse.

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