Found 28 datasets matching "16S rRNA Amplicon Sequencing".
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The Grand Calumet River flows through northwestern Indiana and was designated an EPA Area of Concern (AOC) in 1987. There are multiple legacy pollutants in the river including but not limited to...
Search relevance: 149.74 | Views last month: 0 -
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
Search relevance: 141.73 | Views last month: 0 -
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) with additions of either soluble or insoluble fractions...
Search relevance: 133.77 | Views last month: 3 -
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata). Experiments conducted in Hilo, HI,...
Search relevance: 131.95 | Views last month: 1 -
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) prior to and following the addition of ivermectin to the...
Search relevance: 127.33 | Views last month: 6 -
Amplicon sequencing utilizing next-generation platforms has significantly transformed how research is conducted, specifically microbial ecology. However, primer and sequencing platform biases can...
Search relevance: 124.07 | Views last month: 0 -
The impact of lactose on the gut microbiota of healthy adults was examined, using a short-term, in vitro strategy where fecal samples harvested from 18 donors were cultured anaerobically with and...
Search relevance: 122.12 | Views last month: 0 -
In vitro study of the effects on the human gut microbiota of lemon pectins with two different molecular weights and having varying degrees of esterification. Data collected following incubations...
Search relevance: 122.06 | Views last month: 0 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and Voelschow, 2021) are the raw DNA sequence files referenced in the associated journal article (Kellogg and Pratte,...
Search relevance: 118.84 | Views last month: 0 -
Species- and sex-related differences of four laboratory tephritid fruit fly (Diptera: Tephritidae) gut microbiomes evaluated with full-length 16S rRNA PacBio Kinnex sequencing. Insect gut...
Search relevance: 117.06 | Views last month: 3 -
Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating from immersed Micronized Copper...
Search relevance: 115.03 | Views last month: 0 -
The files in this this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) are the raw 16S ribosomal ribonucleic acid (rRNA) gene amplicon deoxyribonucleic acid (DNA) sequence...
Search relevance: 111.83 | Views last month: 0 -
The files in this data release (Kellogg and others, 2022) are those referenced in the journal article by Evans and others (2022) entitled “Biofilms as Potential Reservoirs of Stony Coral Tissue...
Search relevance: 110.87 | Views last month: 0 -
Supplementary material for manuscript. GenBank Accession numbers to DNA sequences obtained and used. Taxonomy of OTUs - large txt file tab delimited Number of sequences per OTU per Sample - large...
Search relevance: 109.26 | Views last month: 0 -
This soil and vegetation data were collected along a successional gradient at the Indiana Dunes National Park. Soil samples were processed for standard soil chemistry, texture, and nutrients. DNA...
Search relevance: 109.17 | Views last month: 0 -
Composition of active bacterial communities and presence of opportunistic pathogens in Finland (S02)
The bacteria sequence data generated in this study is available in the Short Read Archive (SRA) of NCBI (https://www.ncbi.nlm.nih.gov/) under BioProject PRJNA509718.
Search relevance: 106.43 | Views last month: 0 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) include an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six...
Search relevance: 105.12 | Views last month: 0 -
Investigates the microbial communities of plants and Veggie pillow components with culturable and non-culturable methods providing qualitative and quantitative data. This studies also stresses the...
Search relevance: 100.21 | Views last month: 0 -
This data release contains soil and vegetation data collected along a post glacial chronosequence associated with populations of oriental bittersweet (Celastrus orbiculatus) at the Indiana Dunes...
Search relevance: 98.19 | Views last month: 0 -
1. All OTUs (operational taxonomic units) raw sequences 2. Bacterial taxonomic structures at class and phylum level 3. Analytical data generated by multiple bioinformatics analyses. This dataset...
Search relevance: 97.90 | Views last month: 0
