Found 22 datasets matching "metagenomic sequencing".
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This repository provides analysis code and results produced during evaluation of metagenomic sequencing (MGS) data collected through the Mosaic Standards Challenge. The Mosaic Standards Challenge...
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This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
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This repository provides the raw data, analysis code, and results generated during a systematic evaluation of the impact of selected experimental protocol choices on the metagenomic sequencing...
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This data set is comprised of two tables, one with results of poecivirus screening of tissues from six North American avian species using PCR followed by Sanger sequencing in addition to unbiased...
Search relevance: 76.67 | Views last month: 0 -
International Space Station - Microbial Observatory of Pathogenic Virus, Bacteria, and Fungi project
This study investigated the interplay between the microbial community of the International Space Station and its crew. Environmental samples were collected from 8 habitable locations around the...
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This study investigated the interplay between the microbial community of the International Space Station and its crew. Environmental samples were collected from 8 habitable locations around the...
Search relevance: 70.74 | Views last month: 0 -
This provides taxonomic data (as relative abundances) derived from metagenomic sequencing of greywater samples. This dataset is associated with the following publication: Nagarkar, M., S. Keely,...
Search relevance: 68.81 | Views last month: 0 -
Log10 fecal score ratios for eligible microbial source tracking qPCR assays. This dataset is associated with the following publication: Brumfield, K.D., J.A. Cotruvo, O. Shanks, M. Sivaganesan,...
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This dataset contains Sanger ITS sequences from biocrust lichen taxa collected at Horse Heaven Hills in Washington, USA. It also includes metagenomic biocrust lichen data from 20 plots at Horse...
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Data shows that prophylactic addition of glucose to Harsha Lake water samples could inhibit cyanobacteria growth based on metagenomic sequencing data used to examine differences in the composition...
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This repository contains all submissions made to the Mosaic Standards challenge from the period of the challenge opening through December 31st, 2019. The Mosaic Standards Challenge asked the...
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Amplicon sequencing utilizing next-generation platforms has significantly transformed how research is conducted, specifically microbial ecology. However, primer and sequencing platform biases can...
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The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213...
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This repository provides the raw data and analysis code used to demonstrate the implementation of a mathematical framework that uses internal standards to correct for compositionally in MGS...
Search relevance: 54.57 | Views last month: 1 -
This soil and vegetation data were collected along a successional gradient at the Indiana Dunes National Park. Soil samples were processed for standard soil chemistry, texture, and nutrients. DNA...
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Data were collected in August and September 2015 for analysis of bacteria communities of the Grand Calumet River and associated shorelines. Water samples were collected on three occasions...
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Using the SHIME (an in vitro simulator of the human gut microbiome) we studied changes in the gut metabolome that occurred in response to the administration of the Laticaseibacillus rhamnosus...
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Both coastal inlets and treated wastewater outfalls are recognized as major pathways for microbial contaminants from Land-Based Sources of Pollution (LBSP) to enter Florida's Southeastern coastal...
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A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing...
Search relevance: 49.44 | Views last month: 0 -
These microbiome data and analyses are part of a DNA amplicon sequencing project performed by USDA-ARS scientists at the Foreign-Disease Weed Science Research Unit in Frederick, Maryland. The data...
Search relevance: 45.75 | Views last month: 0
