Found 50 datasets matching "amplicon-sequencing".
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Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating from immersed Micronized Copper...
Search relevance: 223.83 | Views last month: 0 -
The ribosomal RNA (rRNA) internal transcribed spacer (ITS) regions are commonly used to identify fungi and other eukaryotic taxa in amplicon sequencing. The highly conserved rRNA regions flanking...
Search relevance: 213.68 | Views last month: 1 -
Amplicon sequencing data (16S and ITS) was deposited to NCBI Genbank under BioProject ID PRJNA1200133 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200133).
Search relevance: 152.56 | Views last month: 2 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) include an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six...
Search relevance: 137.41 | Views last month: 0 -
This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
Search relevance: 135.03 | Views last month: 2 -
NCBI BioProject Description: Houses the amplicon sequencing data (16S and ITS) used in the study. BioProject ID: PRJNA1114128 Link: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1114128
Search relevance: 111.79 | Views last month: 1 -
This study generated genetic 'barcode' data using high-throughput sequencing to characterize pollen collected by the endangered rusty-patched bumblebee, Bombus affinis. Pollen samples were...
Search relevance: 111.38 | Views last month: 0 -
The International Space Station (ISS) is a unique habitat for humans and microorganisms. Here, we report the results of the ISS experiment EXTREMOPHILES, including the analysis of microbial...
Search relevance: 101.04 | Views last month: 0 -
The Grand Calumet River flows through northwestern Indiana and was designated an EPA Area of Concern (AOC) in 1987. There are multiple legacy pollutants in the river including but not limited to...
Search relevance: 71.53 | Views last month: 0 -
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) with additions of either soluble or insoluble fractions...
Search relevance: 68.16 | Views last month: 3 -
Amplicon sequencing utilizing next-generation platforms has significantly transformed how research is conducted, specifically microbial ecology. However, primer and sequencing platform biases can...
Search relevance: 66.30 | Views last month: 0 -
This dataset contains the enterovirus genome copies measured per liter of sample and read counts obtained from amplicon sequencing of the VP1 and VP4 genes. This dataset is associated with the...
Search relevance: 65.88 | Views last month: 0 -
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata). Experiments conducted in Hilo, HI,...
Search relevance: 63.84 | Views last month: 1 -
This repository contains the code and data to reproduce the figures and analyses in the paper "Microbiota of maize kernels as influenced by Aspergillus flavus infection in susceptible and...
Search relevance: 63.13 | Views last month: 0 -
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) prior to and following the addition of ivermectin to the...
Search relevance: 62.59 | Views last month: 6 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and Voelschow, 2021) are the raw DNA sequence files referenced in the associated journal article (Kellogg and Pratte,...
Search relevance: 62.34 | Views last month: 0 -
The files in this data release (Kellogg and others, 2022) are those referenced in the journal article by Evans and others (2022) entitled “Biofilms as Potential Reservoirs of Stony Coral Tissue...
Search relevance: 55.68 | Views last month: 0 -
Fecal samples from migratory birds were collected from contaminated wetlands in the Bunker Hill Lower Basin Coeur ’d Alene River Watershed and from a Hepton Lake reference area St. Joe River...
Search relevance: 54.57 | Views last month: 0 -
The files in this this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) are the raw 16S ribosomal ribonucleic acid (rRNA) gene amplicon deoxyribonucleic acid (DNA) sequence...
Search relevance: 53.83 | Views last month: 0 -
Fecal samples from migratory birds were collected from Pb contaminated wetlands in the Bunker Hill Lower Basin Coeur ’d Alene River Watershed and from a Hepton Lake reference area St. Joe River...
Search relevance: 53.53 | Views last month: 1
