Found 47 datasets matching "16S amplicon".
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Experiments tested if changes in soil microbiomes within reconstructed freshwater wetlands were associated with exposure to elevated Cu concentrations originating from immersed Micronized Copper...
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This repository contains raw and intermediate data files as well as analysis code from the manuscript "Evaluating the Analytical Performance of Direct-to-Consumer Gut Microbiome Testing Services"....
Search relevance: 131.23 | Views last month: 2 -
This repository contains the code and data to reproduce the figures and analyses in the paper "Microbiota of maize kernels as influenced by Aspergillus flavus infection in susceptible and...
Search relevance: 123.59 | Views last month: 0 -
NCBI BioProject Description: Houses the amplicon sequencing data (16S and ITS) used in the study. BioProject ID: PRJNA1114128 Link: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1114128
Search relevance: 115.04 | Views last month: 1 -
Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus...
Search relevance: 80.58 | Views last month: 0 -
Amplicon sequencing data (16S and ITS) was deposited to NCBI Genbank under BioProject ID PRJNA1200133 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200133).
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The Grand Calumet River flows through northwestern Indiana and was designated an EPA Area of Concern (AOC) in 1987. There are multiple legacy pollutants in the river including but not limited to...
Search relevance: 71.47 | Views last month: 0 -
Study aim was to determine establishment success of antibiotic resistance bacteria in laboratory and mass-reared Mediterranean fruit fly (Ceratitis capitata). Experiments conducted in Hilo, HI,...
Search relevance: 70.79 | Views last month: 1 -
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) with additions of either soluble or insoluble fractions...
Search relevance: 67.37 | Views last month: 3 -
The SHIME® (Simulator of the Human Intestinal Microbial Ecology) was used for in vitro cultivation of the human gut microbiota (3 donors) prior to and following the addition of ivermectin to the...
Search relevance: 67.06 | Views last month: 6 -
Data were generated as part of a NASA-funded study (Turek F (PI) et al. Effects of Spaceflight on Gastrointestinal Microbiota in Mice: Mechanisms and Impact on Multi-System. NASA NRA: NRA...
Search relevance: 64.31 | Views last month: 1 -
In vitro study of the effects on the human gut microbiota of lemon pectins with two different molecular weights and having varying degrees of esterification. Data collected following incubations...
Search relevance: 63.75 | Views last month: 0 -
The impact of lactose on the gut microbiota of healthy adults was examined, using a short-term, in vitro strategy where fecal samples harvested from 18 donors were cultured anaerobically with and...
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The files included in this data release are the raw and processed deoxyribonucleic acid (DNA) sequence files referenced in the journal article by Lawler and others (2016) entitled...
Search relevance: 60.18 | Views last month: 1 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) include an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six...
Search relevance: 59.59 | Views last month: 0 -
The files in this this U.S. Geological Survey (USGS) data release (Kellogg and others, 2021) are the raw 16S ribosomal ribonucleic acid (rRNA) gene amplicon deoxyribonucleic acid (DNA) sequence...
Search relevance: 59.57 | Views last month: 0 -
Amplicon sequencing utilizing next-generation platforms has significantly transformed how research is conducted, specifically microbial ecology. However, primer and sequencing platform biases can...
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16S amplicon sequencing data used to determine the changes in the soybean root-associated microbiome in response to cerium oxide nanoparticles (CeNPs) in a natural soil. Samples include low (1...
Search relevance: 58.63 | Views last month: 0 -
Supplementary material for manuscript. GenBank Accession numbers to DNA sequences obtained and used. Taxonomy of OTUs - large txt file tab delimited Number of sequences per OTU per Sample - large...
Search relevance: 58.55 | Views last month: 0 -
The files provided in this U.S. Geological Survey (USGS) data release (Kellogg and Voelschow, 2021) are the raw DNA sequence files referenced in the associated journal article (Kellogg and Pratte,...
Search relevance: 58.54 | Views last month: 0
